# Tools > Every listed resource, editors’ picks first. The filters below can be combined. - Search: append `?q=` to the URL. Separate several keywords with spaces; all of them must match. Matches name, repository, tags, professions, description and README. - Filter by type: append `?type=` to the URL. - Filter by profession: append `?profession=` to the URL. Separate several ids with commas; a resource matches when it suits any of them. Ids are listed at https://hebbmind.com/api/v1/professions - Filter by tag: append `?tag=` to the URL. Separate several tags with commas; a resource must carry all of them. Tags are listed at https://hebbmind.com/api/v1/tags Resources for ML / AI or Data engineering or Research / Academia: 402 items. > - ML / AI: Model training, evaluation and LLM application development. > - Data engineering: Data pipelines, warehouse modeling, ETL and data quality. > - Research / Academia: Literature search and reviews, experimental data analysis, paper writing and submission. - [Scanpy Single-Cell Analysis](https://hebbmind.com/de/skill/scanpy.md): [Skill] Teaches agents standard single-cell RNA-seq analysis with Scanpy: QC, normalization, PCA/UMAP, clustering, differential expression and plots, with ready-to-run pipeline scripts and guidance on converting Seurat and other R objects to h5ad. Needs Python 3.12+; by K-Dense. - [Scientific Writing (K-Dense)](https://hebbmind.com/de/skill/scientific-writing.md): [Skill] Drafts, revises and reviews research manuscripts, tying every fact and number to verified evidence and covering reporting guidelines, authorship, AI disclosure and confidentiality; explicitly forbids fabricated citations or data. Includes offline check scripts; no API key needed. - [Freqtrade](https://hebbmind.com/de/cli/freqtrade.md): [CLI] Open-source crypto trading framework: download market data, backtest and optimize strategies, and paper trade from the CLI while agents iterate on strategies. Docker recommended; strategies need Python and live trading needs exchange API keys. Backtests don't guarantee returns. - [Academic Research Skills](https://hebbmind.com/de/plugin/academic-research-skills.md): [Plugin] End-to-end academic paper plugin: deep research and literature review, writing, multi-perspective simulated peer review, revision and finalization, pausing for your approval at each stage, with built-in citation verification and integrity checks. Licensed CC BY-NC. - [Academic Research Skills](https://hebbmind.com/de/skill/academic-research-skills.md): [Skill] Skill suite for the whole academic research workflow: deep research (including PRISMA systematic reviews), paper writing, multi-perspective peer review and revision, pausing for human approval at each stage, with citation and integrity checks. CC BY-NC, non-commercial only. - [goose](https://hebbmind.com/de/cli/goose.md): [CLI] General-purpose AI agent that runs on your machine, with a desktop app, CLI and API. Written in Rust, works with 15+ model providers and connects to 70+ extensions via MCP. Originally from Block, now part of the Linux Foundation's AAIF. - [whisper.cpp](https://hebbmind.com/de/cli/whisper-cpp.md): [CLI] C/C++ port of OpenAI's Whisper speech recognition model that transcribes audio offline and outputs subtitles. Runs on CPU, with Apple Silicon and various GPU acceleration. Download a ggml-format model first. - [Obsidian Skills](https://hebbmind.com/de/plugin/obsidian-skills.md): [Plugin] From Obsidian CEO Steph Ango (kepano): teaches agents to write Obsidian-flavored Markdown, Bases and Canvas files and work with vaults through the Obsidian CLI, plus skills like web page content extraction. Also installable into Codex and other agents via npx skills. - [Obsidian Skills](https://hebbmind.com/de/skill/obsidian-skills.md): [Skill] Teaches agents to read and write Obsidian vaults: Obsidian-flavored Markdown, Bases data views, JSON Canvas and the Obsidian CLI, plus Defuddle web content extraction and Knap template rendering. Maintained by Obsidian CEO kepano. - [Ruff](https://hebbmind.com/de/cli/ruff.md): [CLI] Astral's extremely fast Python linter and formatter written in Rust, replacing Flake8, isort and Black, with 900+ built-in rules and auto-fix. - [tmux](https://hebbmind.com/de/cli/tmux.md): [CLI] Terminal multiplexer: run multiple sessions and panes in one terminal, with processes surviving disconnects. Agents use it to host long-running tasks and drive interactive programs, and many parallel multi-agent session tools build on it. - [Qlib](https://hebbmind.com/de/cli/qlib.md): [CLI] Microsoft's open-source AI quant investment research platform: the qrun command runs dataset building, model training, backtesting and evaluation from a YAML config, with many benchmark models. The official dataset is paused, so prepare market data per the README first. - [Umi-OCR](https://hebbmind.com/de/cli/umi-ocr.md): [CLI] Free, open-source offline OCR desktop app for screenshots, batch images, scanned PDFs and QR codes, callable via the umi-ocr CLI or an HTTP API (the CLI relies on the app's local HTTP service, on by default). Windows and Linux only. - [Pyright LSP](https://hebbmind.com/de/plugin/pyright-lsp.md): [Plugin] Connects Claude Code to the Pyright language server for static type checking and code intelligence in Python. Install pyright first with npm, pip or pipx. Official Anthropic plugin. - [Math Olympiad](https://hebbmind.com/de/plugin/math-olympiad.md): [Plugin] Official Anthropic plugin that solves competition math such as IMO and Putnam problems, with adversarial checks by an independent verifier that only sees the clean proof. Gives up explicitly rather than bluffing when unsure, and outputs LaTeX/PDF once verified. - [Session Report](https://hebbmind.com/de/plugin/session-report.md): [Plugin] Official Anthropic plugin that reads local session logs in ~/.claude/projects and generates an interactive HTML usage report covering tokens, cache hit rate, subagents, skills and the most expensive prompts, with optimization tips. Needs Node.js. - [project-artifact](https://hebbmind.com/de/plugin/project-artifact.md): [Plugin] Official Anthropic plugin that builds a shareable status page for big multi-track projects such as migrations, launches or research: goals, workstream order, next steps and risks; say 'refresh' to update the same link. Needs a claude.ai login; Artifacts are a beta for Team and Enterprise plans. - [Skill Creator](https://hebbmind.com/de/plugin/skill-creator.md): [Plugin] Creates or improves Agent Skills from scratch: writes eval cases to test them, runs benchmarks with variance analysis, and tunes descriptions for more accurate triggering. Maintained by Anthropic. - [MCP Server Dev](https://hebbmind.com/de/plugin/mcp-server-dev.md): [Plugin] Designs and builds MCP servers: first picks a deployment model among remote HTTP, MCPB bundles and local stdio, then guides tool design, auth and in-chat interactive components. Maintained by Anthropic. - [Pandoc](https://hebbmind.com/de/cli/pandoc.md): [CLI] Universal document converter between dozens of formats including Markdown, Word, HTML, LaTeX and EPUB, with templates, citations and Lua filters. PDF output uses LaTeX by default, which you install separately. - [Fabric](https://hebbmind.com/de/cli/fabric.md): [CLI] Turns common prompts such as summarizing, extracting insights and rewriting into reusable patterns you pipe text, web pages or YouTube transcripts through, using many model providers or local Ollama. Can also run as a REST API. Run fabric --setup first to configure models. - [aria2](https://hebbmind.com/de/cli/aria2.md): [CLI] Lightweight multi-protocol command-line downloader that fetches in parallel segments from multiple sources over HTTP(S), FTP, SFTP, BitTorrent and Metalink. Resumes downloads, reads URLs in bulk from text files and offers a JSON-RPC interface for scripts or agents. - [Data Engineering](https://hebbmind.com/de/plugin/data-engineering.md): [Plugin] Data engineering plugin from the wshobson/agents marketplace: a data engineer subagent, a data pipeline command, and skills for Airflow DAGs, dbt transformations, Spark tuning and data quality, to help build ETL and data warehouses. - [Machine Learning Ops](https://hebbmind.com/de/plugin/machine-learning-ops.md): [Plugin] MLOps plugin from the wshobson/agents marketplace: data scientist, ML engineer and MLOps engineer subagents and a /ml-pipeline command that runs the pipeline in phases from data analysis and training to deployment and monitoring, plus ML pipeline and recommender system skills. - [LLM Application Dev](https://hebbmind.com/de/plugin/llm-application-dev.md): [Plugin] Plugin for building LLM apps: LangGraph agents with memory and tool use, hybrid-search RAG, vector index tuning, prompt optimization and LLM evaluation. Includes 3 subagents and 8 skills. - [Manim](https://hebbmind.com/de/cli/manim.md): [CLI] Engine for math and explainer animations in Python (Community Edition, ManimCE): write scenes and render them to video with the manim command, letting agents create teaching and science animations. On macOS install cairo and pkg-config first; formulas need LaTeX. - [Quantitative Trading](https://hebbmind.com/de/plugin/quantitative-trading.md): [Plugin] Quant trading plugin from the wshobson/agents marketplace: quant analyst and risk manager subagents plus backtesting and risk metrics skills for strategy backtests, portfolio optimization and risk measures like VaR, Sharpe ratio and max drawdown. Needs local Python; not investment advice. - [Lightpanda Browser](https://hebbmind.com/de/cli/browser.md): [CLI] Headless browser written from scratch in Zig for AI agents and automation, using less memory and running faster than headless Chrome in official benchmarks. fetch turns pages into Markdown, and it can serve CDP or MCP. Telemetry is on by default (an env var disables it); Windows needs WSL. - [Nushell](https://hebbmind.com/de/cli/nushell.md): [CLI] Cross-platform shell built around structured data: pipelines pass tables instead of plain text, and you can open and query JSON, CSV, TOML and more directly. Default builds include nu --mcp, which serves it to agents as an MCP server. - [Marker](https://hebbmind.com/de/cli/marker.md): [CLI] Converts PDFs, images, PPTX, DOCX, XLSX, EPUB and more into Markdown, JSON or HTML, preserving tables, formulas and layout, with optional LLM help for higher accuracy. Needs Python 3.10+ and PyTorch; large-scale commercial use of the model weights needs a paid license. - [Agent TARS CLI](https://hebbmind.com/de/cli/ui-tars-desktop.md): [CLI] ByteDance's open-source multimodal agent CLI: operates browsers via vision or the DOM and calls terminal, file and MCP tools to complete tasks, with a Web UI and headless server mode. Needs Node.js 22+ and a model API key. - [@agent-infra/mcp-server-browser](https://hebbmind.com/de/mcp/browser.md): [MCP] Browser automation MCP server open-sourced by ByteDance in the UI-TARS-desktop repo: drives pages through Puppeteer accessibility data with an optional vision mode, running locally over stdio or remotely over SSE or Streamable HTTP. - [Find Skills](https://hebbmind.com/de/skill/find-skills.md): [Skill] When a user asks whether a skill exists for some task, searches the skills.sh ecosystem with the skills CLI, then recommends and installs a fit. Maintained by Vercel Labs and shipped in the skills CLI repo. - [skills](https://hebbmind.com/de/cli/skills.md): [CLI] Package manager for the open Agent Skills ecosystem: one command installs skills from GitHub and other sources into Claude Code, Codex, Cursor and dozens more agents, with search, update and removal. From Vercel Labs. - [llmfit](https://hebbmind.com/de/cli/llmfit.md): [CLI] Detects your CPU, memory and GPU and scores open models on whether they run, speed, quality and context, then works with local runtimes like Ollama, llama.cpp and MLX to download and benchmark them. recommend --json gives agent-friendly output. - [PDFMathTranslate](https://hebbmind.com/de/cli/pdfmathtranslate.md): [CLI] Translates full PDF papers while preserving formulas, charts and layout (command pdf2zh), outputting monolingual and side-by-side bilingual PDFs. Uses Google Translate by default and can switch to DeepL, OpenAI and others; also runs as an MCP server. - [Claude Code Router](https://hebbmind.com/de/cli/claude-code-router.md): [CLI] Local model gateway that routes requests from Claude Code, Codex and other coding agents to providers like DeepSeek, Kimi, Gemini and OpenRouter, with failover, rule-based routing and request logs. Bring your own API keys. - [Vibe-Trading](https://hebbmind.com/de/mcp/vibe-trading.md): [MCP] Trading research agent from HKU's HKUDS whose MCP server offers 70+ tools for quotes, financials, backtesting and research across A-shares, Hong Kong and US stocks and crypto. Needs local Python; HK, US and crypto research need no API key. For research only; not investment advice. - [book-to-skill](https://hebbmind.com/de/skill/book-to-skill.md): [Skill] Distills technical books, doc folders or paper collections (PDF, EPUB, DOCX, Markdown and more) into an agent skill with a core framework, on-demand chapter files, glossary and cheat sheet for lookup while working. Extraction needs local Python; poppler or docling optional for PDFs. - [WeKnora CLI](https://hebbmind.com/de/cli/tencent-cli.md): [CLI] Official CLI for Tencent's open-source knowledge base platform WeKnora: upload documents, manage knowledge bases, run hybrid search and answer questions from them, or serve as a read-only MCP. Needs your own WeKnora deployment and a source build with Go 1.26+. - [jq](https://hebbmind.com/de/cli/jq.md): [CLI] Lightweight command-line JSON processor that slices, filters, maps and transforms JSON with concise expressions and no runtime dependencies. A staple for agents parsing API responses and logs. - [Data](https://hebbmind.com/de/plugin/data.md): [Plugin] Data analysis plugin: writes queries in each SQL dialect, explores datasets, runs statistical tests, charts with Python and builds interactive HTML dashboards, then reviews methods and conclusions before sharing. Connects to Snowflake, BigQuery and other warehouses. Official from Anthropic. - [PDF Viewer](https://hebbmind.com/de/plugin/pdf-viewer.md): [Plugin] Anthropic's official plugin that opens PDFs in a local interactive viewer where Claude proposes highlights, comments and approval stamps in batches, walks you through form filling, places signature images and exports an annotated copy. Needs Node.js 18+; signatures are not digital certificates. - [SQL Queries](https://hebbmind.com/de/skill/sql-queries.md): [Skill] Anthropic's official data skill that guides agents to write, translate and optimize SQL across Snowflake, BigQuery, Databricks, PostgreSQL and other warehouse dialects, including CTEs, window functions and analytical aggregations. - [Bio Research](https://hebbmind.com/de/plugin/bio-research.md): [Plugin] For preclinical life sciences research: bundles MCP connectors for PubMed, bioRxiv, ChEMBL, Open Targets, ClinicalTrials and more, plus analysis skills for single-cell RNA QC, scvi-tools and nf-core pipelines. Official from Anthropic; some data sources need accounts. - [OCRmyPDF](https://hebbmind.com/de/cli/ocrmypdf.md): [CLI] Adds a searchable, copyable text layer to scanned PDFs, with automatic deskew, rotation and size optimization, outputting PDF/A by default. Built on Tesseract, supports 100+ languages and runs fully locally. - [Cognee MCP](https://hebbmind.com/de/mcp/cognee-mcp.md): [MCP] Runs the cognee memory engine as an MCP server whose remember, recall and forget tools write documents and conversations into a knowledge graph and vector store for cross-session retrieval. Start it with Docker or uv first; needs an LLM API key by default, or connect to Cognee Cloud. - [Graphiti MCP Server](https://hebbmind.com/de/mcp/getzep-mcp-server.md): [MCP] Writes conversations and business data into Graphiti's temporal knowledge graph so agents can retrieve long-term memory by entity, fact and time. Open source from Zep; start FalkorDB or Neo4j and the server with Docker first, and configure an LLM API key. - [Dexter](https://hebbmind.com/de/cli/dexter.md): [CLI] Financial research terminal agent, like Claude Code for finance: breaks company research questions into steps, pulls financial statements and market data, and self-checks before answering. Needs Bun, a model API key and a Financial Datasets API key; for learning and research only. - [baoyu-translate](https://hebbmind.com/de/skill/baoyu-translate.md): [Skill] Translation skill by Baoyu with quick, normal and refined modes, custom glossaries, and target audience and style settings. Translates local files or URLs; suited to long-form Chinese-English translation and localization. Needs bun or npx. Next page: https://hebbmind.com/de/tools.md?page=3&profession=algorithm%2Cdata-engineering%2Cresearch