# Tools

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Resources for ML / AI or Data engineering or Healthcare: 233 items.

> - ML / AI: Model training, evaluation and LLM application development.
> - Data engineering: Data pipelines, warehouse modeling, ETL and data quality.
> - Healthcare: Clinical notes and coding, drug and guideline lookup, FHIR and imaging data, clinical research.

- [MarkItDown-MCP](https://hebbmind.com/de/mcp/markitdown-mcp.md): [MCP] From Microsoft: converts PDF, Word, Excel, PowerPoint, HTML and other files or URLs to Markdown so agents can read and search them. A single convert_to_markdown tool over STDIO or local HTTP.
- [MarkItDown](https://hebbmind.com/de/cli/markitdown.md): [CLI] Converts PDF, Word, Excel, PowerPoint, HTML, images, audio and more into Markdown that keeps headings, lists and tables, ready for LLMs to read and analyze. Maintained by Microsoft; requires Python 3.10+.
- [Ollama](https://hebbmind.com/de/cli/ollama.md): [CLI] Download and run open models such as Gemma locally with one command. Provides a REST API and Python/JS libraries, and ollama launch can point Claude Code, Codex and other agents at local models.
- [Skill Creator](https://hebbmind.com/de/skill/skill-creator.md): [Skill] Guides the agent through writing or improving a skill: clarify intent, draft SKILL.md, run scored evals with and without the skill, then tune the description so it triggers accurately. Official Anthropic skill.
- [Browser Use](https://hebbmind.com/de/cli/browser-use.md): [CLI] Open-source browser agent project. Its browser-use CLI lets Claude Code, Codex and other agents drive your logged-in local Chrome with Python snippets, or connect to a cloud browser; also ships a Python agent library. The cloud browser needs an API key.
- [Knowledge Graph Memory Server](https://hebbmind.com/de/mcp/memory.md): [MCP] Gives agents long-term memory across sessions with a local knowledge graph of entities, relations and observations, stored in a local JSONL file you can query and edit. Official MCP reference implementation.
- [Scientific Agent Skills](https://hebbmind.com/de/skill/scientific-agent-skills.md): [Skill] 166 research skills maintained by K-Dense (formerly Claude Scientific Skills), spanning bioinformatics, cheminformatics, clinical research, materials and physics, including unified access to 78 public databases such as PubChem and UniProt. Works with Claude Code, Codex and Cursor.
- [DuckDB](https://hebbmind.com/de/cli/duckdb.md): [CLI] In-process analytical SQL database. Its CLI queries CSV, Parquet and JSON files directly with SQL, no import or server needed, so agents can sample and aggregate large files. Officially maintained.
- [MCP Toolbox for Databases](https://hebbmind.com/de/mcp/mcp-toolbox.md): [MCP] Google's open-source database MCP server with ready-made query and SQL tools for dozens of sources, including PostgreSQL, MySQL, BigQuery, Spanner and MongoDB. Define controlled custom queries in tools.yaml.
- [Hermes Agent](https://hebbmind.com/de/cli/hermes-agent.md): [CLI] Self-improving agent from Nous Research with built-in memory and a learning loop that turns experience into skills. Works with any model provider; the hermes command has a terminal UI, and a gateway connects it to Telegram, Slack and more and runs scheduled tasks.
- [Claude API](https://hebbmind.com/de/skill/claude-api.md): [Skill] Reference for the Claude API and Anthropic SDK: model selection and pricing, streaming, tool use, prompt caching, Managed Agents and more, plus workflows for model migration and prompt audits. Official Anthropic skill.
- [MCP Builder](https://hebbmind.com/de/skill/mcp-builder.md): [Skill] Guides agents in building quality MCP servers: research the protocol and target API, design tools, implement with Python (FastMCP) or the TypeScript SDK, and write evaluation questions to test the result. Official Anthropic skill.
- [prompts.chat](https://hebbmind.com/de/plugin/prompts-chat.md): [Plugin] Official Claude Code plugin for the prompts.chat library: search prompts and Agent Skills from your coding assistant, fill in variables and improve prompts with AI. Includes commands, subagents and a remote MCP; saving your own prompts needs an API key.
- [Agent SDK Dev](https://hebbmind.com/de/plugin/agent-sdk-dev.md): [Plugin] Scaffolds a Claude Agent SDK project in Python or TypeScript interactively with /new-sdk-app, then a verifier agent checks dependencies, config and code against official best practices. Maintained by Anthropic.
- [Plugin Dev](https://hebbmind.com/de/plugin/plugin-dev.md): [Plugin] Toolkit for building Claude Code plugins: 7 skills on plugin structure, hooks, MCP integration, commands, subagents and skill writing, a guided eight-phase create command, and subagents for agent generation, plugin validation and skill review. Maintained by Anthropic.
- [llama.cpp](https://hebbmind.com/de/cli/llama-cpp.md): [CLI] Local LLM inference engine in plain C/C++ with a command-line chat and an OpenAI-compatible HTTP server; pulls and runs GGUF models straight from Hugging Face. Supports Apple Silicon, CUDA, Vulkan and other hardware, plus low-bit quantization.
- [Pi Coding Agent](https://hebbmind.com/de/cli/coding-agent.md): [CLI] Minimal, extensible terminal AI agent that can write its own prompt templates, skills, extensions and themes. Offers print, JSON and RPC modes for scripting, plus a TypeScript SDK. Needs Node.js 22.19+.
- [TradingAgents](https://hebbmind.com/de/cli/tradingagents.md): [CLI] Multi-agent investment research framework where fundamental, sentiment, news and technical analysts, bull and bear researchers, a trader and risk managers debate a stock and produce a report and rating. Covers US, Hong Kong and A-shares. Needs Python and an LLM API key; not investment advice.
- [Whisper](https://hebbmind.com/de/cli/whisper.md): [CLI] OpenAI's open-source general-purpose speech recognition model. The whisper command transcribes many languages, translates foreign speech into English and writes subtitle files. Needs FFmpeg; faster with a GPU.
- [vLLM](https://hebbmind.com/de/cli/vllm.md): [CLI] High-throughput LLM inference and serving engine: vllm serve starts an OpenAI- and Anthropic-compatible server in one command. Supports 200+ model architectures from Hugging Face, quantization and distributed inference. Aimed mainly at NVIDIA, AMD and other GPUs.
- [Sequential Thinking MCP Server](https://hebbmind.com/de/mcp/sequentialthinking.md): [MCP] Provides a sequential_thinking tool that guides the model to break complex problems into revisable, branching steps. Good for planning, analysis and tasks that need careful iteration. Official MCP reference server.
- [PaddleOCR](https://hebbmind.com/de/cli/paddleocr.md): [CLI] Baidu PaddlePaddle's official OCR and document parsing tool: the paddleocr command reads text from images and parses PDFs and scans into Markdown or JSON, supporting 100+ languages with models that run locally.
- [PaddleOCR MCP Server](https://hebbmind.com/de/mcp/paddlepaddle-mcp-server.md): [MCP] Official PaddleOCR MCP: text recognition and layout parsing for images and PDFs (PP-OCR, PP-StructureV3, PaddleOCR-VL), returning text or Markdown. Runs inference locally, or calls the official API or a self-hosted service.
- [uv](https://hebbmind.com/de/cli/uv.md): [CLI] Astral's extremely fast Python package and project manager written in Rust, replacing pip, pipx, poetry, pyenv and more. Supports lockfiles and multiple Python versions, and uvx runs Python tools without installing them.
- [Scrapling](https://hebbmind.com/de/mcp/scrapling.md): [MCP] MCP server built into the adaptive Python scraping framework Scrapling: supports plain HTTP requests, browser rendering and stealth fetching, and uses CSS selectors to pass only the target content to the AI, saving tokens and filtering out prompt injection.
- [Scrapling](https://hebbmind.com/de/cli/scrapling.md): [CLI] Adaptive web scraping framework: scrapling extract turns a page into Markdown, text or HTML in one command, with CSS selectors and browser rendering for dynamic pages, plus an MCP server (needs the ai extra). Needs Python 3.10+ and a browser install on first use.
- [Crawl4AI](https://hebbmind.com/de/cli/crawl4ai.md): [CLI] Open-source, LLM-friendly web crawler that turns pages into clean Markdown for RAG and agents. Ships the crwl CLI and supports deep crawling and question-driven data extraction (extraction needs an LLM key). Free to self-host.
- [MinerU](https://hebbmind.com/de/cli/mineru.md): [CLI] Document parser from OpenDataLab that turns PDFs, images and Office files into Markdown or JSON, handling tables, formulas and complex layouts well, with page-by-page reading and citation anchors for agents. Parses locally by default; needs Python 3.10+.
- [Tesseract OCR](https://hebbmind.com/de/cli/tesseract.md): [CLI] Classic open-source OCR engine and CLI that reads text from images and outputs plain text, hOCR, searchable PDF or TSV. Supports 100+ languages; install the language data for each language you need.
- [LlamaFactory](https://hebbmind.com/de/cli/llamafactory.md): [CLI] All-in-one LLM fine-tuning framework: llamafactory-cli handles pretraining, SFT, PPO/DPO alignment and LoRA/QLoRA training, plus chat inference, weight merging and export, and OpenAI-style API serving for 100+ open models. Has a Web UI; training usually needs a GPU.
- [Ruflo](https://hebbmind.com/de/plugin/ruflo.md): [Plugin] Multi-agent orchestration framework for Claude Code and Codex, formerly Claude Flow: swarm coordination, self-learning memory and cross-machine federated communication. The marketplace offers 30+ plugins; full features need npx ruflo init.
- [Ruflo](https://hebbmind.com/de/cli/ruflo.md): [CLI] Multi-agent orchestration framework formerly called Claude Flow: ruflo init gives Claude Code nearly 100 specialized subagents, swarm coordination, cross-session vector memory and hooks; add --codex to configure Codex instead. Also works as a standalone MCP server or plugin marketplace.
- [career-ops](https://hebbmind.com/de/plugin/career-ops.md): [Plugin] Job search system that runs in your local AI coding CLI: scans job portals, scores roles with a structured A-H evaluation and a 1-5 rating, flags fake listings, tailors ATS resumes and cover letters, and tracks applications. Never submits for you. Needs Node.js.
- [Docling](https://hebbmind.com/de/cli/docling.md): [CLI] Parses PDF, DOCX, PPTX, XLSX, HTML, images and audio, recovering layout, reading order, tables and formulas, and exports Markdown, HTML or lossless JSON. Started by IBM Research, now hosted by the LF AI & Data Foundation; runs fully locally.
- [FFmpeg](https://hebbmind.com/de/cli/ffmpeg.md): [CLI] Command-line toolkit for transcoding, cutting, joining, frame extraction and streaming of audio and video, including ffmpeg, ffprobe and ffplay. A core dependency for agents handling media. The GitHub repo is the official mirror.
- [rclone](https://hebbmind.com/de/cli/rclone.md): [CLI] 'rsync for cloud storage': sync and copy files across dozens of providers such as S3, Google Drive, OneDrive and Alibaba Cloud OSS, with encryption and mounting. Set up remotes with rclone config before use.
- [Freqtrade](https://hebbmind.com/de/cli/freqtrade.md): [CLI] Open-source crypto trading framework: download market data, backtest and optimize strategies, and paper trade from the CLI while agents iterate on strategies. Docker recommended; strategies need Python and live trading needs exchange API keys. Backtests don't guarantee returns.
- [goose](https://hebbmind.com/de/cli/goose.md): [CLI] General-purpose AI agent that runs on your machine, with a desktop app, CLI and API. Written in Rust, works with 15+ model providers and connects to 70+ extensions via MCP. Originally from Block, now part of the Linux Foundation's AAIF.
- [whisper.cpp](https://hebbmind.com/de/cli/whisper-cpp.md): [CLI] C/C++ port of OpenAI's Whisper speech recognition model that transcribes audio offline and outputs subtitles. Runs on CPU, with Apple Silicon and various GPU acceleration. Download a ggml-format model first.
- [CLI-Anything](https://hebbmind.com/de/cli/cli-anything.md): [CLI] From HKU's Data Intelligence Lab: plugins or skills for Claude Code, Codex and other agents generate agent-callable CLIs for apps like GIMP, Blender and LibreOffice, and the cli-hub package manager finds and installs ready-made community CLIs. Needs Python 3.10+.
- [Ruff](https://hebbmind.com/de/cli/ruff.md): [CLI] Astral's extremely fast Python linter and formatter written in Rust, replacing Flake8, isort and Black, with 900+ built-in rules and auto-fix.
- [tmux](https://hebbmind.com/de/cli/tmux.md): [CLI] Terminal multiplexer: run multiple sessions and panes in one terminal, with processes surviving disconnects. Agents use it to host long-running tasks and drive interactive programs, and many parallel multi-agent session tools build on it.
- [Qlib](https://hebbmind.com/de/cli/qlib.md): [CLI] Microsoft's open-source AI quant investment research platform: the qrun command runs dataset building, model training, backtesting and evaluation from a YAML config, with many benchmark models. The official dataset is paused, so prepare market data per the README first.
- [aria2](https://hebbmind.com/de/cli/aria2.md): [CLI] Lightweight multi-protocol command-line downloader that fetches in parallel segments from multiple sources over HTTP(S), FTP, SFTP, BitTorrent and Metalink. Resumes downloads, reads URLs in bulk from text files and offers a JSON-RPC interface for scripts or agents.
- [Data Engineering](https://hebbmind.com/de/plugin/data-engineering.md): [Plugin] Data engineering plugin from the wshobson/agents marketplace: a data engineer subagent, a data pipeline command, and skills for Airflow DAGs, dbt transformations, Spark tuning and data quality, to help build ETL and data warehouses.
- [Machine Learning Ops](https://hebbmind.com/de/plugin/machine-learning-ops.md): [Plugin] MLOps plugin from the wshobson/agents marketplace: data scientist, ML engineer and MLOps engineer subagents and a /ml-pipeline command that runs the pipeline in phases from data analysis and training to deployment and monitoring, plus ML pipeline and recommender system skills.
- [LLM Application Dev](https://hebbmind.com/de/plugin/llm-application-dev.md): [Plugin] Plugin for building LLM apps: LangGraph agents with memory and tool use, hybrid-search RAG, vector index tuning, prompt optimization and LLM evaluation. Includes 3 subagents and 8 skills.
- [Quantitative Trading](https://hebbmind.com/de/plugin/quantitative-trading.md): [Plugin] Quant trading plugin from the wshobson/agents marketplace: quant analyst and risk manager subagents plus backtesting and risk metrics skills for strategy backtests, portfolio optimization and risk measures like VaR, Sharpe ratio and max drawdown. Needs local Python; not investment advice.
- [Nushell](https://hebbmind.com/de/cli/nushell.md): [CLI] Cross-platform shell built around structured data: pipelines pass tables instead of plain text, and you can open and query JSON, CSV, TOML and more directly. Default builds include nu --mcp, which serves it to agents as an MCP server.
- [Marker](https://hebbmind.com/de/cli/marker.md): [CLI] Converts PDFs, images, PPTX, DOCX, XLSX, EPUB and more into Markdown, JSON or HTML, preserving tables, formulas and layout, with optional LLM help for higher accuracy. Needs Python 3.10+ and PyTorch; large-scale commercial use of the model weights needs a paid license.

Next page: https://hebbmind.com/de/tools.md?page=2&profession=algorithm%2Cdata-engineering%2Chealthcare
