# Tools

> Every listed resource, editors’ picks first. The filters below can be combined.

- Search: append `?q=<keywords>` to the URL. Separate several keywords with spaces; all of them must match. Matches name, repository, tags, professions, description and README.
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Resources for DevOps / SRE or Research / Academia or Healthcare: 463 items.

> - DevOps / SRE: Deployment, monitoring, cloud resources and reliability.
> - Research / Academia: Literature search and reviews, experimental data analysis, paper writing and submission.
> - Healthcare: Clinical notes and coding, drug and guideline lookup, FHIR and imaging data, clinical research.

- [yt-dlp](https://hebbmind.com/de/cli/yt-dlp.md): [CLI] Command-line audio and video downloader supporting thousands of sites: pick formats and quality, grab subtitles and metadata, and merge or transcode with FFmpeg. The actively maintained fork of youtube-dl.
- [MarkItDown-MCP](https://hebbmind.com/de/mcp/markitdown-mcp.md): [MCP] From Microsoft: converts PDF, Word, Excel, PowerPoint, HTML and other files or URLs to Markdown so agents can read and search them. A single convert_to_markdown tool over STDIO or local HTTP.
- [MarkItDown](https://hebbmind.com/de/cli/markitdown.md): [CLI] Converts PDF, Word, Excel, PowerPoint, HTML, images, audio and more into Markdown that keeps headings, lists and tables, ready for LLMs to read and analyze. Maintained by Microsoft; requires Python 3.10+.
- [PDF](https://hebbmind.com/de/skill/pdf.md): [Skill] Extracts text and tables from PDFs; merges, splits and rotates pages, adds watermarks, fills forms and OCRs scanned documents. The official Anthropic skill behind Claude's document features; source-available, not open source.
- [Claude Code](https://hebbmind.com/de/cli/claude-code.md): [CLI] Anthropic's terminal coding agent: understands your codebase, edits code, runs commands and handles git workflows, with plugins, MCP and a headless mode (claude -p). Sign in with a Claude account or set an API key.
- [Codex CLI](https://hebbmind.com/de/cli/openai-codex.md): [CLI] OpenAI's coding agent that runs locally, written in Rust: reads and writes code and runs commands inside an OS-level sandbox. Sign in with a ChatGPT plan or use an API key.
- [Scientific Agent Skills](https://hebbmind.com/de/skill/scientific-agent-skills.md): [Skill] 166 research skills maintained by K-Dense (formerly Claude Scientific Skills), spanning bioinformatics, cheminformatics, clinical research, materials and physics, including unified access to 78 public databases such as PubChem and UniProt. Works with Claude Code, Codex and Cursor.
- [GitHub CLI](https://hebbmind.com/de/cli/gh.md): [CLI] GitHub's official CLI: manage pull requests, issues, releases and Actions workflows from the terminal. Most commands support --json output that agents can parse, and an official agent skill is available. Run gh auth login first.
- [GitHub MCP Server](https://hebbmind.com/de/mcp/github.md): [MCP] GitHub's official MCP server: lets agents read and write repositories and code, manage issues and pull requests, and check Actions workflows and code-scanning alerts. Use the hosted remote server or run it locally in Docker; needs a personal access token or OAuth.
- [Cloudflare MCP Server](https://hebbmind.com/de/mcp/mcp-server-cloudflare.md): [MCP] Cloudflare's official remote MCP servers: manage Workers and bindings such as KV, R2 and D1, and query logs and observability, builds, DNS analytics and Radar data. Authorizes with Cloudflare OAuth; some features need a paid plan.
- [Teach](https://hebbmind.com/de/skill/teach.md): [Skill] Turns the current folder into a teaching workspace you can resume across conversations: asks your learning goal, gathers reliable sources, builds short HTML lessons and cheat sheets, and tracks progress. Good for self-study and lesson prep; invoke manually (/teach), no API key.
- [Hermes Agent](https://hebbmind.com/de/cli/hermes-agent.md): [CLI] Self-improving agent from Nous Research with built-in memory and a learning loop that turns experience into skills. Works with any model provider; the hermes command has a terminal UI, and a gateway connects it to Telegram, Slack and more and runs scheduled tasks.
- [Discernment Nudge](https://hebbmind.com/de/skill/discernment-nudge.md): [Skill] After giving advice, a draft or a data analysis, adds 2-3 targeted follow-up questions that prompt the user to check key facts, test the reasoning and fill in missing context. Fires at most once per conversation. Official Anthropic skill.
- [Hookify](https://hebbmind.com/de/plugin/hookify.md): [Plugin] Generates hook rules from a one-line description or by analyzing recent conversations. Rules are Markdown files with match conditions that block or warn on dangerous commands and unwanted patterns, and take effect without a restart. Official Anthropic plugin.
- [TradingAgents](https://hebbmind.com/de/cli/tradingagents.md): [CLI] Multi-agent investment research framework where fundamental, sentiment, news and technical analysts, bull and bear researchers, a trader and risk managers debate a stock and produce a report and rating. Covers US, Hong Kong and A-shares. Needs Python and an LLM API key; not investment advice.
- [Whisper](https://hebbmind.com/de/cli/whisper.md): [CLI] OpenAI's open-source general-purpose speech recognition model. The whisper command transcribes many languages, translates foreign speech into English and writes subtitle files. Needs FFmpeg; faster with a GPU.
- [Gemini CLI](https://hebbmind.com/de/cli/gemini-cli.md): [CLI] Google's official open-source terminal agent using Gemini models with a 1M-token context. Built-in Google Search, file and shell tools, plus MCP support. Personal Google accounts get a free quota.
- [vLLM](https://hebbmind.com/de/cli/vllm.md): [CLI] High-throughput LLM inference and serving engine: vllm serve starts an OpenAI- and Anthropic-compatible server in one command. Supports 200+ model architectures from Hugging Face, quantization and distributed inference. Aimed mainly at NVIDIA, AMD and other GPUs.
- [Fetch MCP Server](https://hebbmind.com/de/mcp/fetch.md): [MCP] Official MCP reference server that fetches web pages and converts them to Markdown for the model, reading long pages in chunks from a given offset. Zero config, but it can reach internal network addresses, so use it with care.
- [PaddleOCR](https://hebbmind.com/de/cli/paddleocr.md): [CLI] Baidu PaddlePaddle's official OCR and document parsing tool: the paddleocr command reads text from images and parses PDFs and scans into Markdown or JSON, supporting 100+ languages with models that run locally.
- [PaddleOCR MCP Server](https://hebbmind.com/de/mcp/paddlepaddle-mcp-server.md): [MCP] Official PaddleOCR MCP: text recognition and layout parsing for images and PDFs (PP-OCR, PP-StructureV3, PaddleOCR-VL), returning text or Markdown. Runs inference locally, or calls the official API or a self-hosted service.
- [Archify](https://hebbmind.com/de/skill/archify.md): [Skill] Turns natural-language descriptions, Mermaid or a real code repo into interactive single-file HTML diagrams: architecture, flowcharts, sequence diagrams, data flows and state machines. Validates output automatically and exports PNG or SVG.
- [RTK (Rust Token Killer)](https://hebbmind.com/de/cli/rtk.md): [CLI] Rust CLI proxy that filters and compresses command output before it reaches the agent's context, covering git, tests, grep, ls and 100+ other commands and cutting bash output by up to about 90%. Hooks automatically rewrite commands run by Claude Code, Codex and others.
- [fzf](https://hebbmind.com/de/cli/fzf.md): [CLI] General-purpose command-line fuzzy finder for any text input, such as file lists, command history or processes. Besides the interactive UI it has a non-interactive --filter mode, plus shell key bindings and completion.
- [MinerU](https://hebbmind.com/de/cli/mineru.md): [CLI] Document parser from OpenDataLab that turns PDFs, images and Office files into Markdown or JSON, handling tables, formulas and complex layouts well, with page-by-page reading and citation anchors for agents. Parses locally by default; needs Python 3.10+.
- [LlamaFactory](https://hebbmind.com/de/cli/llamafactory.md): [CLI] All-in-one LLM fine-tuning framework: llamafactory-cli handles pretraining, SFT, PPO/DPO alignment and LoRA/QLoRA training, plus chat inference, weight merging and export, and OpenAI-style API serving for 100+ open models. Has a Web UI; training usually needs a GPU.
- [OpenBB MCP Server](https://hebbmind.com/de/mcp/openbb-finance-mcp-server.md): [MCP] Official OpenBB MCP server exposing the OpenBB Platform's equity, ETF, macroeconomic, crypto and news data to agents; enable only the tool categories you need to save context. Needs uv locally; some data sources need your own API keys. Not investment advice.
- [act](https://hebbmind.com/de/cli/act.md): [CLI] Runs GitHub Actions workflows locally in Docker, so you can test .github/workflows changes without repeated commits and pushes, or use workflows as a local task runner. Needs Docker installed.
- [Ansible](https://hebbmind.com/de/cli/ansible.md): [CLI] Agentless IT automation: uses SSH and playbooks for configuration management, app deployment, cloud orchestration and ad hoc commands at scale, with nothing to install on target machines. Maintained primarily by Red Hat.
- [Cline CLI](https://hebbmind.com/de/cli/cline-cli.md): [CLI] Official Cline CLI sharing its agent core with the VS Code extension: plan/act modes, MCP, checkpoints and subagents; --yolo and --json run it unattended in CI and scripts. Sign in with Cline or a ChatGPT subscription, or bring your own API key.
- [ripgrep](https://hebbmind.com/de/cli/ripgrep.md): [CLI] Fast regex search across directories (command rg) that respects .gitignore, skips hidden and binary files by default and filters by file type. A go-to command for coding agents searching a codebase.
- [Docling](https://hebbmind.com/de/cli/docling.md): [CLI] Parses PDF, DOCX, PPTX, XLSX, HTML, images and audio, recovering layout, reading order, tables and formulas, and exports Markdown, HTML or lossless JSON. Started by IBM Research, now hosted by the LF AI & Data Foundation; runs fully locally.
- [AI Hedge Fund](https://hebbmind.com/de/cli/ai-hedge-fund.md): [CLI] Multi-agent simulated hedge fund: agents modeled on investors like Buffett and Munger work with quant and risk modules to analyze stocks, with backtesting. Good for teaching investment frameworks. Needs Financial Datasets and model API keys; no real trading, not investment advice.
- [tldr-pages](https://hebbmind.com/de/cli/tldr.md): [CLI] Community-maintained simplified command help with example-first pages for common CLI tools, easier to read than man. Install an official client (Python, Rust or Node.js), then run tldr followed by a command name.
- [bat](https://hebbmind.com/de/cli/bat.md): [CLI] A cat replacement with syntax highlighting, line numbers and Git change markers, plus --line-range to print specific lines. Falls back to plain text in pipes and other non-interactive use, and pairs with git diff or tail -f for code and logs.
- [rclone](https://hebbmind.com/de/cli/rclone.md): [CLI] 'rsync for cloud storage': sync and copy files across dozens of providers such as S3, Google Drive, OneDrive and Alibaba Cloud OSS, with encryption and mounting. Set up remotes with rclone config before use.
- [mkcert](https://hebbmind.com/de/cli/mkcert.md): [CLI] Creates a local CA with one command and issues development HTTPS certificates trusted by your system and browsers, for localhost, IPs and wildcard domains, with no extra configuration. Run mkcert -install once first to add the root certificate to the trust store.
- [Typst](https://hebbmind.com/de/cli/typst.md): [CLI] Modern markup-based typesetting system, a LaTeX alternative for papers, reports and resumes. Fast incremental compilation; typst compile outputs a PDF in one command and watch mode recompiles automatically.
- [CLI-Anything QGIS](https://hebbmind.com/de/cli/qgis.md): [CLI] QGIS command-line wrapper from HKU's CLI-Anything project: create and edit .qgz projects, add GeoPackage layers and features, build print layouts and export PDF or images, and call QGIS processing algorithms, with JSON results. Needs QGIS desktop and a Python that can import PyQGIS.
- [Academic Research Skills](https://hebbmind.com/de/skill/academic-research-skills.md): [Skill] Skill suite for the whole academic research workflow: deep research (including PRISMA systematic reviews), paper writing, multi-perspective peer review and revision, pausing for human approval at each stage, with citation and integrity checks. CC BY-NC, non-commercial only.
- [Academic Research Skills](https://hebbmind.com/de/plugin/academic-research-skills.md): [Plugin] End-to-end academic paper plugin: deep research and literature review, writing, multi-perspective simulated peer review, revision and finalization, pausing for your approval at each stage, with built-in citation verification and integrity checks. Licensed CC BY-NC.
- [Scientific Writing (K-Dense)](https://hebbmind.com/de/skill/scientific-writing.md): [Skill] Drafts, revises and reviews research manuscripts, tying every fact and number to verified evidence and covering reporting guidelines, authorship, AI disclosure and confidentiality; explicitly forbids fabricated citations or data. Includes offline check scripts; no API key needed.
- [Database Lookup](https://hebbmind.com/de/skill/database-lookup.md): [Skill] Unified database lookup skill from K-Dense's scientific collection: reproducibly queries about 80 public database APIs such as PubChem, UniProt, ChEMBL, ClinicalTrials.gov and FRED, returning traceable results with endpoints, parameters and count checks. Some need API keys.
- [Literature Review (K-Dense)](https://hebbmind.com/de/skill/literature-review.md): [Skill] Systematic literature reviews following PRISMA and similar standards: searches PubMed, arXiv, bioRxiv and other databases, verifies each citation's DOI, and outputs Markdown and PDF in APA, Nature or other styles. Main web search uses parallel-cli and needs a Parallel account.
- [Scanpy Single-Cell Analysis](https://hebbmind.com/de/skill/scanpy.md): [Skill] Teaches agents standard single-cell RNA-seq analysis with Scanpy: QC, normalization, PCA/UMAP, clustering, differential expression and plots, with ready-to-run pipeline scripts and guidance on converting Seurat and other R objects to h5ad. Needs Python 3.12+; by K-Dense.
- [Statistical Analysis](https://hebbmind.com/de/skill/statistical-analysis.md): [Skill] Guides agents to the right statistical method for research data: t-tests, ANOVA, chi-square, regression and Bayesian analysis, checking assumptions, computing effect sizes and power, and reporting results in APA format. Python-based (pingouin, statsmodels); by K-Dense.
- [Homebrew](https://hebbmind.com/de/cli/brew.md): [CLI] Package manager for macOS and Linux: agents can brew install CLI tools and desktop apps (casks), or use brew bundle to restore a dev environment from a Brewfile.
- [Terraform](https://hebbmind.com/de/cli/terraform.md): [CLI] HashiCorp's infrastructure-as-code tool: manage multi-cloud and SaaS resources with declarative config, previewing changes with plan before running apply. Providers cover all major clouds. Licensed under BSL 1.1.
- [tmux](https://hebbmind.com/de/cli/tmux.md): [CLI] Terminal multiplexer: run multiple sessions and panes in one terminal, with processes surviving disconnects. Agents use it to host long-running tasks and drive interactive programs, and many parallel multi-agent session tools build on it.
- [Obsidian Skills](https://hebbmind.com/de/plugin/obsidian-skills.md): [Plugin] From Obsidian CEO Steph Ango (kepano): teaches agents to write Obsidian-flavored Markdown, Bases and Canvas files and work with vaults through the Obsidian CLI, plus skills like web page content extraction. Also installable into Codex and other agents via npx skills.

Next page: https://hebbmind.com/de/tools.md?page=2&profession=devops%2Cresearch%2Chealthcare
