Tools

OpenAI's official Codex plugin for Outlook mail: triages your inbox, summarizes threads, extracts action items, and drafts replies or forwards, for people who handle heavy email loads. Requires Codex with a ChatGPT sign-in and an authorized Microsoft account.

OpenAI's official Codex plugin that guides sequencing analysis from BCL/FASTQ: QC, RNA-seq differential expression, single-cell, variant calling and metagenomics, favoring nf-core and other public pipelines with reproducible run logs. Checks for local tools first. Research use only.

OpenAI's official Codex plugin that makes Google Drive the single entry point to search, organize, share and export files, handing Docs, Sheets, Slides and comments to dedicated sub-skills for summaries, edits and new files. Authorize your Google account in Codex.

OpenAI's official Codex plugin for Google Calendar: summarize today's schedule, compare availability across people, prep for meetings, and create, edit or delete events. Requires signing in to Codex with ChatGPT and authorizing your Google account.

Granola's official plugin in OpenAI's Codex marketplace: search past Granola meeting notes by topic, person, company or date, and cite the discussions and decisions when writing proposals, reports or analyses. Codex only; needs a Granola account already recording meetings.

Turns articles, reports, papers or notes into a .pptx of full-slide images with speaker notes, in 12 styles such as lectures and thesis defenses; slide text is not editable. Needs Python 3; uses Codex's built-in image generation, or an OpenAI-compatible image API key in Claude Code.

Scrapes web pages into Markdown or structured data, with full-site crawling, sitemaps, web search and interaction with dynamic pages. Maintained by Firecrawl; the cloud needs an API key (self-hosting is possible), and the keyless hosted endpoint only offers scrape, search and parse.

Command-line email client supporting IMAP, SMTP, JMAP, Gmail and Microsoft Graph, with multiple accounts and --json output, so agents can check, search, compose and send mail. A first-run wizard auto-detects your mailbox settings.

Open-source LLM evaluation platform: one opencompass command picks the model and datasets and runs the evaluation across hundreds of benchmarks. Works with local Hugging Face models and API models, with vLLM and LMDeploy for faster inference.

Converts and two-way syncs Jupyter notebooks with plain Python scripts or Markdown, so agents can edit research and teaching notebooks like ordinary text and diffs stay readable. Needs a local Python environment; install with pip.

Cleans a LaTeX project before arXiv submission: removes comments, auxiliary files and unused .tex files and images, and can compress images, so internal notes are not published with the source. From Google Research; installable with Homebrew on macOS.

Python library and CLI for extracting main web content: fetches pages, crawls via sitemaps and RSS feeds, strips headers, footers and other noise, and outputs TXT, Markdown, JSON, XML and more with metadata. Also processes downloaded HTML offline.

Anthropic's official OS-level sandbox CLI: restricts file and network access for agents, MCP servers and any command without containers, using sandbox-exec on macOS and bubblewrap on Linux. Currently a research preview.

Generates template-driven charts as single-file HTML: picks a chart from real Lupi, Basics, Glance, Maps and Interactive gallery implementations based on data shape, or fills one of 12 Chinese and English report templates. Defaults to Mono grayscale with semantic color presets. Written in Chinese.

14 skills plus a hook-based reminder layer for use with n8n-mcp: teaches agents to write correct n8n expressions, configure nodes, apply workflow patterns, fix validation errors and deploy self-hosted n8n. Requires n8n-mcp to be set up first.

Veteran suite of CSV command-line tools: in2csv converts Excel and JSON to CSV, csvcut, csvgrep and csvsort filter and sort, csvstat computes statistics, and csvsql runs SQL directly against CSV files.

Google's official skills for building ADK agents: dev workflow, scaffolding, the ADK Python API, evaluation with LLM judges and adaptive rubrics, deployment to Agent Runtime, Cloud Run or GKE, publishing and observability. Works with agents-cli; local dev needs only an AI Studio key.

Posit's open-source scientific and technical publishing system built on Pandoc: embed Python, R or Julia code in Markdown or Jupyter notebooks, then quarto render produces HTML, PDF, Word, slides, websites and books.

Veteran command-line task manager with projects, tags, priorities, due dates and custom reports, JSON export, and a rich ecosystem of hooks and extensions, well suited for agents that record and track tasks.

Community-maintained MCP for Jira and Confluence: search with JQL/CQL and create or update issues, pages and comments. Supports both Cloud and Server/Data Center deployments; needs an API token or personal access token.

Classic plain-text double-entry accounting CLI: entries live in a text file and it produces balance, register, budget and other reports directly, with no database or hidden state, so agents can easily read and write ledgers, reconcile and report.

Semi-automated research workflow for computer science and AI researchers: ideation, Zotero literature management, experiment analysis and reports, paper writing and polishing, and rebuttals, with optional Obsidian knowledge base. 40+ skills; also installable as a Claude Code plugin.

Semi-automated research assistant for CS and AI researchers that links ideation, Zotero literature management, experiment analysis and reporting, paper writing and reviewer responses, and keeps project knowledge in Obsidian. Branches for Codex and other agents exist.

Content-preserving structural PDF transformations: merge, split, rotate pages, encrypt and decrypt, linearize and inspect internal structure, easy to script for batch jobs. It does not render pages or extract text.