Tools

OpenAI's official life-science skills: 49 skills query public databases such as UniProt, ClinVar, gnomAD and AlphaFold through Python scripts, with a router skill that breaks down questions, normalizes entities and compiles sourced evidence. Written mainly for Codex.

Searches multiple pages in your Notion workspace and turns them into briefs, research summaries, comparisons or full reports with citations, written back to Notion. From OpenAI's official plugin repo (developer: Notion); needs the Notion MCP.

Turns a Notion PRD or feature spec into an implementation plan page and tasks, flagging open questions and linking spec, plan and tasks while tracking progress. From OpenAI's official plugin repo (developer: Notion); needs the Notion MCP connected.

Prepares meetings using past notes, requirements and decisions in Notion: picks a template by meeting type, drafts the agenda and pre-reads, and adds research. From OpenAI's official plugin repo (developer: Notion); needs the Notion MCP.

OpenAI's official Codex plugin that uses the Gmail connector to search mail, read threads, draft replies and tidy your inbox. The plugin bundles no extra skills; authorize your Google account in Codex.

Turns conversations and notes into structured Notion pages such as team wikis, how-to guides, decision records and FAQs, linked to related pages. From OpenAI's official plugin repo (developer: Notion); needs the Notion MCP.

ClickUp's official plugin in OpenAI's Codex marketplace: search your whole ClickUp workspace in natural language, find, create, update and manage tasks, and check whether a project or sprint is at risk of slipping. Codex only; needs a ClickUp account and authorization.

Build with OpenAI best practices inside Codex: call the OpenAI API, build and deploy agents with the Agents SDK, create ChatGPT apps and prepare submission materials, and create API keys directly. Maintained by OpenAI; Codex only.

OpenAI's official Codex plugin for adding the OpenAI Ads measurement pixel and optional Conversions API (CAPI) to a website, with local validation scripts plus key and deduplication guidance. Needs the site's source and an OpenAI Ads account; review manually before launch.

OpenAI's official Codex plugin that guides sequencing analysis from BCL/FASTQ: QC, RNA-seq differential expression, single-cell, variant calling and metagenomics, favoring nf-core and other public pipelines with reproducible run logs. Checks for local tools first. Research use only.

Turns articles, reports, papers or notes into a .pptx of full-slide images with speaker notes, in 12 styles such as lectures and thesis defenses; slide text is not editable. Needs Python 3; uses Codex's built-in image generation, or an OpenAI-compatible image API key in Claude Code.

Scrapes web pages into Markdown or structured data, with full-site crawling, sitemaps, web search and interaction with dynamic pages. Maintained by Firecrawl; the cloud needs an API key (self-hosting is possible), and the keyless hosted endpoint only offers scrape, search and parse.

Lets agents operate Home Assistant: control devices, query state and history, create and debug automations and edit dashboards, with 80+ tools. Community-maintained (unofficial); requires your own Home Assistant instance, and running via uvx needs a long-lived access token.

Anthropic's reference implementation for finding and fixing vulnerabilities: Claude Code skills for threat modeling, static scanning, triage and patching, plus an autonomous recon-to-patch pipeline (C/C++ memory bugs by default; needs Docker and gVisor). No longer maintained.

Command-line email client supporting IMAP, SMTP, JMAP, Gmail and Microsoft Graph, with multiple accounts and --json output, so agents can check, search, compose and send mail. A first-run wizard auto-detects your mailbox settings.

Tw93's lean pack of engineering-habit skills: /think to pressure-test plans, /hunt for root causes, /check to review diffs, /ui for frontend interfaces, /write to polish Chinese and English prose, and more (8 skills). Works with both Claude Code and Codex.

Open-source LLM evaluation platform: one opencompass command picks the model and datasets and runs the evaluation across hundreds of benchmarks. Works with local Hugging Face models and API models, with vLLM and LMDeploy for faster inference.

A more intuitive find-and-replace tool than sed: uses JavaScript/Python-style regex syntax, supports literal string mode and in-place file edits, which suits agents doing bulk text rewrites.

Turns any folder into a Markdown task board: Claude Code or Codex break work into tasks with acceptance criteria for review before coding, managed from the terminal or a browser board. Works without Git for personal plans too. Runs locally with no account; needs Node.js or Homebrew.

Hands your current browser session to the agent through a Chrome extension: read console logs and network requests, take screenshots, and run Lighthouse performance, accessibility and SEO audits without signing in again.

Converts and two-way syncs Jupyter notebooks with plain Python scripts or Markdown, so agents can edit research and teaching notebooks like ordinary text and diffs stay readable. Needs a local Python environment; install with pip.

Cleans a LaTeX project before arXiv submission: removes comments, auxiliary files and unused .tex files and images, and can compress images, so internal notes are not published with the source. From Google Research; installable with Homebrew on macOS.

Anthropic's official OS-level sandbox CLI: restricts file and network access for agents, MCP servers and any command without containers, using sandbox-exec on macOS and bubblewrap on Linux. Currently a research preview.

Python library and CLI for extracting main web content: fetches pages, crawls via sitemaps and RSS feeds, strips headers, footers and other noise, and outputs TXT, Markdown, JSON, XML and more with metadata. Also processes downloaded HTML offline.