Tools

Teaches agents standard single-cell RNA-seq analysis with Scanpy: QC, normalization, PCA/UMAP, clustering, differential expression and plots, with ready-to-run pipeline scripts and guidance on converting Seurat and other R objects to h5ad. Needs Python 3.12+; by K-Dense.

Open-source crypto trading framework: download market data, backtest and optimize strategies, and paper trade from the CLI while agents iterate on strategies. Docker recommended; strategies need Python and live trading needs exchange API keys. Backtests don't guarantee returns.

End-to-end academic paper plugin: deep research and literature review, writing, multi-perspective simulated peer review, revision and finalization, pausing for your approval at each stage, with built-in citation verification and integrity checks. Licensed CC BY-NC.

Skill suite for the whole academic research workflow: deep research (including PRISMA systematic reviews), paper writing, multi-perspective peer review and revision, pausing for human approval at each stage, with citation and integrity checks. CC BY-NC, non-commercial only.

General-purpose AI agent that runs on your machine, with a desktop app, CLI and API. Written in Rust, works with 15+ model providers and connects to 70+ extensions via MCP. Originally from Block, now part of the Linux Foundation's AAIF.

C/C++ port of OpenAI's Whisper speech recognition model that transcribes audio offline and outputs subtitles. Runs on CPU, with Apple Silicon and various GPU acceleration. Download a ggml-format model first.

From Obsidian CEO Steph Ango (kepano): teaches agents to write Obsidian-flavored Markdown, Bases and Canvas files and work with vaults through the Obsidian CLI, plus skills like web page content extraction. Also installable into Codex and other agents via npx skills.

Teaches agents to read and write Obsidian vaults: Obsidian-flavored Markdown, Bases data views, JSON Canvas and the Obsidian CLI, plus Defuddle web content extraction and Knap template rendering. Maintained by Obsidian CEO kepano.

Astral's extremely fast Python linter and formatter written in Rust, replacing Flake8, isort and Black, with 900+ built-in rules and auto-fix.

Terminal multiplexer: run multiple sessions and panes in one terminal, with processes surviving disconnects. Agents use it to host long-running tasks and drive interactive programs, and many parallel multi-agent session tools build on it.

Microsoft's open-source AI quant investment research platform: the qrun command runs dataset building, model training, backtesting and evaluation from a YAML config, with many benchmark models. The official dataset is paused, so prepare market data per the README first.

Free, open-source offline OCR desktop app for screenshots, batch images, scanned PDFs and QR codes, callable via the umi-ocr CLI or an HTTP API (the CLI relies on the app's local HTTP service, on by default). Windows and Linux only.

Designs and builds MCP servers: first picks a deployment model among remote HTTP, MCPB bundles and local stdio, then guides tool design, auth and in-chat interactive components. Maintained by Anthropic.

Official Anthropic plugin that solves competition math such as IMO and Putnam problems, with adversarial checks by an independent verifier that only sees the clean proof. Gives up explicitly rather than bluffing when unsure, and outputs LaTeX/PDF once verified.

Creates or improves Agent Skills from scratch: writes eval cases to test them, runs benchmarks with variance analysis, and tunes descriptions for more accurate triggering. Maintained by Anthropic.

Official Asana plugin in Claude's plugin marketplace: connects Claude Code to the Asana V2 MCP server to create and manage tasks, search projects, change assignees and track progress. Create your own Asana OAuth app first, then run /asana-setup after installing.

Connects Claude Code to the Pyright language server for static type checking and code intelligence in Python. Install pyright first with npm, pip or pipx. Official Anthropic plugin.

Official Anthropic plugin that reads local session logs in ~/.claude/projects and generates an interactive HTML usage report covering tokens, cache hit rate, subagents, skills and the most expensive prompts, with optimization tips. Needs Node.js.

Official Anthropic plugin that builds a shareable status page for big multi-track projects such as migrations, launches or research: goals, workstream order, next steps and risks; say 'refresh' to update the same link. Needs a claude.ai login; Artifacts are a beta for Team and Enterprise plans.

Universal document converter between dozens of formats including Markdown, Word, HTML, LaTeX and EPUB, with templates, citations and Lua filters. PDF output uses LaTeX by default, which you install separately.

Turns common prompts such as summarizing, extracting insights and rewriting into reusable patterns you pipe text, web pages or YouTube transcripts through, using many model providers or local Ollama. Can also run as a REST API. Run fabric --setup first to configure models.

Lightweight multi-protocol command-line downloader that fetches in parallel segments from multiple sources over HTTP(S), FTP, SFTP, BitTorrent and Metalink. Resumes downloads, reads URLs in bulk from text files and offers a JSON-RPC interface for scripts or agents.

MLOps plugin from the wshobson/agents marketplace: data scientist, ML engineer and MLOps engineer subagents and a /ml-pipeline command that runs the pipeline in phases from data analysis and training to deployment and monitoring, plus ML pipeline and recommender system skills.

Plugin for building LLM apps: LangGraph agents with memory and tool use, hybrid-search RAG, vector index tuning, prompt optimization and LLM evaluation. Includes 3 subagents and 8 skills.