Tools

Orchestrates subagents in-session to map the architecture, build a threat model and hunt for vulnerabilities. Every finding is independently verified before it goes in the report, which also comes as SARIF, and optional patch files are left for you to apply. Official Anthropic plugin.

A complete harness for coding agents: dozens of subagents, nearly 300 skills, hooks, rules, memory and continuous learning, plus the AgentShield security scanner. Built mainly for Claude Code, with Codex support.

End-to-end academic paper plugin: deep research and literature review, writing, multi-perspective simulated peer review, revision and finalization, pausing for your approval at each stage, with built-in citation verification and integrity checks. Licensed CC BY-NC.

From Obsidian CEO Steph Ango (kepano): teaches agents to write Obsidian-flavored Markdown, Bases and Canvas files and work with vaults through the Obsidian CLI, plus skills like web page content extraction. Also installable into Codex and other agents via npx skills.

Multi-host plugin marketplace with 90+ single-purpose plugins, 200+ subagents and 180+ skills covering language-specific development, ops, security, data and multi-agent orchestration. Installing a plugin loads only that plugin's content.

Security plugin from the wshobson/agents marketplace: commands for SAST, dependency vulnerability scanning and hardening, security auditor and threat modeling subagents, and threat analysis skills such as STRIDE and attack trees.

Three layers of security checks on agent-written code: rule-based warnings on about 25 risky patterns during edits, a model review of the diff at turn end, and an agent tracing cross-file bugs like IDOR and SSRF at commit. Official Anthropic plugin; needs Python 3.8+ and model API access.

Official Anthropic plugin that builds a shareable status page for big multi-track projects such as migrations, launches or research: goals, workstream order, next steps and risks; say 'refresh' to update the same link. Needs a claude.ai login; Artifacts are a beta for Team and Enterprise plans.

Official Anthropic plugin that solves competition math such as IMO and Putnam problems, with adversarial checks by an independent verifier that only sees the clean proof. Gives up explicitly rather than bluffing when unsure, and outputs LaTeX/PDF once verified.

For preclinical life sciences research: bundles MCP connectors for PubMed, bioRxiv, ChEMBL, Open Targets, ClinicalTrials and more, plus analysis skills for single-cell RNA QC, scvi-tools and nf-core pipelines. Official from Anthropic; some data sources need accounts.

Anthropic's official plugin that opens PDFs in a local interactive viewer where Claude proposes highlights, comments and approval stamps in batches, walks you through form filling, places signature images and exports an annotated copy. Needs Node.js 18+; signatures are not digital certificates.

Turns an Obsidian vault into a local-first knowledge base: imports sources into interlinked notes with citations, answers questions from what is already in the vault, and adds 15 skills including search, vault health checks and Canvas knowledge graphs.

Plugin marketplace for AI research with nearly 100 skills in 23 categories, from ideation, fine-tuning and post-training to distributed training, inference serving, evaluation and paper writing, coordinated end to end by the autoresearch skill.

Codex-native version of Academic Research Skills: one skill chains topic selection and literature review, drafting, simulated peer review, revision guidance and experiment planning, with citation verification and integrity checks. For grad students and faculty. Needs Codex; CC BY-NC 4.0 license.

Lets agents work with the Hugging Face Hub through the hf CLI: search and download models and datasets, manage repos and Spaces, and run training and evaluation jobs on cloud GPUs, with more workflow skills installable as needed. Maintained by Hugging Face.

Anthropic's official AI governance plugin: tiers AI use cases against your internal register, runs impact assessments across applicable laws such as the EU AI Act, reviews vendor AI terms for training-data and liability risk, and periodically checks for drift between AI policy and practice.

Privacy compliance plugin: decides whether processing activities need a PIA or DPIA, generates privacy impact assessments, reviews DPAs from the controller or processor side, and drafts DSAR responses within statutory deadlines. Official from Anthropic.

Plugin marketplace from security firm Trail of Bits with 40+ plugins for code auditing, CodeQL/Semgrep static analysis, variant analysis, supply-chain risk, smart contract security and reverse engineering. Codex can load it directly too.

OpenAI's official Codex plugin with about 50 skills that route questions to genetics, omics, pathway, protein structure, chemistry and clinical evidence sources, can split the work across parallel subagents, and synthesize sourced conclusions.

Security scans for a whole repo or for changes like PRs and commits, with threat modeling, vulnerability triage, fixes and re-verification; reports export to JSON, SARIF and more. OpenAI's official Codex plugin; requires Codex Security access.

OpenAI's official Codex plugin that uses the local API of the Zotero desktop app to search your library, export BibTeX, insert citations into LaTeX or Markdown drafts, and import new references after you confirm. Requires Zotero desktop.

Consensus's official Codex plugin: uses its remote MCP to search 220 million peer-reviewed papers for literature reviews, bibliographies, research gap analysis and cited writing. Needs a Consensus sign-in; the free tier returns a limited number of results.

OpenAI's official Codex plugin that guides sequencing analysis from BCL/FASTQ: QC, RNA-seq differential expression, single-cell, variant calling and metagenomics, favoring nf-core and other public pipelines with reproducible run logs. Checks for local tools first. Research use only.

Semi-automated research assistant for CS and AI researchers that links ideation, Zotero literature management, experiment analysis and reporting, paper writing and reviewer responses, and keeps project knowledge in Obsidian. Branches for Codex and other agents exist.