# Tools

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Type Skill, Resources for ML / AI or Research / Academia: 94 items.

> - ML / AI: Model training, evaluation and LLM application development.
> - Research / Academia: Literature search and reviews, experimental data analysis, paper writing and submission.

- [Skill Creator](https://hebbmind.com/fr/skill/skill-creator.md): [Skill] Guides the agent through writing or improving a skill: clarify intent, draft SKILL.md, run scored evals with and without the skill, then tune the description so it triggers accurately. Official Anthropic skill.
- [PDF](https://hebbmind.com/fr/skill/pdf.md): [Skill] Extracts text and tables from PDFs; merges, splits and rotates pages, adds watermarks, fills forms and OCRs scanned documents. The official Anthropic skill behind Claude's document features; source-available, not open source.
- [Scientific Agent Skills](https://hebbmind.com/fr/skill/scientific-agent-skills.md): [Skill] 166 research skills maintained by K-Dense (formerly Claude Scientific Skills), spanning bioinformatics, cheminformatics, clinical research, materials and physics, including unified access to 78 public databases such as PubChem and UniProt. Works with Claude Code, Codex and Cursor.
- [Teach](https://hebbmind.com/fr/skill/teach.md): [Skill] Turns the current folder into a teaching workspace you can resume across conversations: asks your learning goal, gathers reliable sources, builds short HTML lessons and cheat sheets, and tracks progress. Good for self-study and lesson prep; invoke manually (/teach), no API key.
- [Discernment Nudge](https://hebbmind.com/fr/skill/discernment-nudge.md): [Skill] After giving advice, a draft or a data analysis, adds 2-3 targeted follow-up questions that prompt the user to check key facts, test the reasoning and fill in missing context. Fires at most once per conversation. Official Anthropic skill.
- [Claude API](https://hebbmind.com/fr/skill/claude-api.md): [Skill] Reference for the Claude API and Anthropic SDK: model selection and pricing, streaming, tool use, prompt caching, Managed Agents and more, plus workflows for model migration and prompt audits. Official Anthropic skill.
- [MCP Builder](https://hebbmind.com/fr/skill/mcp-builder.md): [Skill] Guides agents in building quality MCP servers: research the protocol and target API, design tools, implement with Python (FastMCP) or the TypeScript SDK, and write evaluation questions to test the result. Official Anthropic skill.
- [Academic Research Skills](https://hebbmind.com/fr/skill/academic-research-skills.md): [Skill] Skill suite for the whole academic research workflow: deep research (including PRISMA systematic reviews), paper writing, multi-perspective peer review and revision, pausing for human approval at each stage, with citation and integrity checks. CC BY-NC, non-commercial only.
- [Scientific Writing (K-Dense)](https://hebbmind.com/fr/skill/scientific-writing.md): [Skill] Drafts, revises and reviews research manuscripts, tying every fact and number to verified evidence and covering reporting guidelines, authorship, AI disclosure and confidentiality; explicitly forbids fabricated citations or data. Includes offline check scripts; no API key needed.
- [Database Lookup](https://hebbmind.com/fr/skill/database-lookup.md): [Skill] Unified database lookup skill from K-Dense's scientific collection: reproducibly queries about 80 public database APIs such as PubChem, UniProt, ChEMBL, ClinicalTrials.gov and FRED, returning traceable results with endpoints, parameters and count checks. Some need API keys.
- [Literature Review (K-Dense)](https://hebbmind.com/fr/skill/literature-review.md): [Skill] Systematic literature reviews following PRISMA and similar standards: searches PubMed, arXiv, bioRxiv and other databases, verifies each citation's DOI, and outputs Markdown and PDF in APA, Nature or other styles. Main web search uses parallel-cli and needs a Parallel account.
- [Scanpy Single-Cell Analysis](https://hebbmind.com/fr/skill/scanpy.md): [Skill] Teaches agents standard single-cell RNA-seq analysis with Scanpy: QC, normalization, PCA/UMAP, clustering, differential expression and plots, with ready-to-run pipeline scripts and guidance on converting Seurat and other R objects to h5ad. Needs Python 3.12+; by K-Dense.
- [Statistical Analysis](https://hebbmind.com/fr/skill/statistical-analysis.md): [Skill] Guides agents to the right statistical method for research data: t-tests, ANOVA, chi-square, regression and Bayesian analysis, checking assumptions, computing effect sizes and power, and reporting results in APA format. Python-based (pingouin, statsmodels); by K-Dense.
- [Obsidian Skills](https://hebbmind.com/fr/skill/obsidian-skills.md): [Skill] Teaches agents to read and write Obsidian vaults: Obsidian-flavored Markdown, Bases data views, JSON Canvas and the Obsidian CLI, plus Defuddle web content extraction and Knap template rendering. Maintained by Obsidian CEO kepano.
- [Find Skills](https://hebbmind.com/fr/skill/find-skills.md): [Skill] When a user asks whether a skill exists for some task, searches the skills.sh ecosystem with the skills CLI, then recommends and installs a fit. Maintained by Vercel Labs and shipped in the skills CLI repo.
- [book-to-skill](https://hebbmind.com/fr/skill/book-to-skill.md): [Skill] Distills technical books, doc folders or paper collections (PDF, EPUB, DOCX, Markdown and more) into an agent skill with a core framework, on-demand chapter files, glossary and cheat sheet for lookup while working. Extraction needs local Python; poppler or docling optional for PDFs.
- [baoyu-translate](https://hebbmind.com/fr/skill/baoyu-translate.md): [Skill] Translation skill by Baoyu with quick, normal and refined modes, custom glossaries, and target audience and style settings. Translates local files or URLs; suited to long-form Chinese-English translation and localization. Needs bun or npx.
- [Google Agent Skills](https://hebbmind.com/fr/skill/google-google-skills.md): [Skill] Google's official skill library, focused on Google Cloud: 100+ skills for gcloud, Cloud Run, GKE, BigQuery, IAM, monitoring and logging, and the Well-Architected Framework, plus Ads and Analytics.
- [Agent Skills for Context Engineering](https://hebbmind.com/fr/skill/agent-skills-for-context-engineering.md): [Skill] Context and harness engineering skills: context fundamentals, degradation diagnosis and compression, multi-agent architectures, memory systems, tool design, LLM-as-judge evaluation and self-improvement loops. Focused on principles and design patterns, not tied to any agent platform.
- [ARIS (Auto-claude-code-research-in-sleep)](https://hebbmind.com/fr/skill/auto-claude-code-research-in-sleep.md): [Skill] Lets Claude Code push ML research forward unattended: literature review, topic selection, experiment deployment, cross-model review loops and paper writing through rebuttal, in 80+ skills. Codex acts as the independent reviewer by default; other model pairings work too.
- [Prompt Master](https://hebbmind.com/fr/skill/prompt-master.md): [Skill] Writes precise prompts for a specific AI tool: identifies the target tool, extracts your intent, asks at most three questions if details are missing, then outputs a lean, paste-ready prompt. Covers dozens of tools including ChatGPT, Claude Code, Cursor, Midjourney and Sora.
- [AI Research Skills](https://hebbmind.com/fr/skill/ai-research-skills.md): [Skill] Nearly 100 skills spanning the AI research workflow: ideation and literature review, fine-tuning and post-training, distributed training, inference serving, evaluation, interpretability and paper writing, tied together by an autoresearch orchestration skill.
- [Hugging Face CLI (hf-cli)](https://hebbmind.com/fr/skill/hf-cli.md): [Skill] Teaches agents the Hugging Face Hub CLI hf: search and download models, manage datasets, Spaces, Buckets and repos, and run Jobs and inference endpoints. The skill content is generated from your local CLI, so install hf first. Maintained by Hugging Face.
- [Hugging Face Skills](https://hebbmind.com/fr/skill/huggingface-skills.md): [Skill] Hugging Face's official skills: manage Hub models and datasets with the hf CLI, fine-tune language and vision models, run model evaluations, and build Gradio apps deployed to Spaces. Needs an HF account; cloud training on HF Jobs requires a paid plan.
- [Hugging Face LLM Trainer](https://hebbmind.com/fr/skill/huggingface-llm-trainer.md): [Skill] Lets agents fine-tune language and vision models with TRL or Unsloth on Hugging Face Jobs cloud GPUs, supporting SFT, DPO, GRPO and reward models, and convert results to GGUF for local use. Requires an HF Pro or higher paid plan. Maintained by Hugging Face.
- [Supervisor-Skills](https://hebbmind.com/fr/skill/supervisor-skills.md): [Skill] Twelve research skills from Prof. Yuyu Luo's team at HKUST (Guangzhou), built on a decade of top-venue publishing and reviewing: idea evaluation, intro and body writing, polishing, surveys, pre-submission review, figures, Draw.io rebuilds and rebuttals. Non-commercial license.
- [Scientific Figure Making](https://hebbmind.com/fr/skill/scientific-figure-making.md): [Skill] Publication-quality matplotlib plotting skill from a Yale PhD student: bar charts, trends, heatmaps and multi-panel figures with consistent fonts, colors and export settings, plus real plotting scripts from papers published in venues like Nature Machine Intelligence. Needs Python.
- [Research Paper Writing Skills](https://hebbmind.com/fr/skill/research-paper-writing-skills.md): [Skill] Turns Peng Sida's public research-writing notes into a skill: revises abstracts, introductions, methods and experiments of ML/CV/NLP papers from a reviewer's view, checks that each claim has experimental evidence, and runs a pre-submission self-check. Pure methodology, no API key.
- [Jupyter Notebooks](https://hebbmind.com/fr/skill/jupyter-notebook.md): [Skill] Creates, edits and validates reproducible Python and SQL Jupyter notebooks: organizes cells as reports or tutorials, checks conclusions against actual output and reruns top to bottom before handoff. Maintained by OpenAI in the Data Analytics plugin of openai/plugins.
- [Life Science Research](https://hebbmind.com/fr/skill/openai-skills-5.md): [Skill] OpenAI's official life-science skills: 49 skills query public databases such as UniProt, ClinVar, gnomAD and AlphaFold through Python scripts, with a router skill that breaks down questions, normalizes entities and compiles sourced evidence. Written mainly for Codex.
- [Codex PPT Skill](https://hebbmind.com/fr/skill/codex-ppt-skill.md): [Skill] Turns articles, reports, papers or notes into a .pptx of full-slide images with speaker notes, in 12 styles such as lectures and thesis defenses; slide text is not editable. Needs Python 3; uses Codex's built-in image generation, or an OpenAI-compatible image API key in Claude Code.
- [Google Agents CLI Skills](https://hebbmind.com/fr/skill/google-skills.md): [Skill] Google's official skills for building ADK agents: dev workflow, scaffolding, the ADK Python API, evaluation with LLM judges and adaptive rubrics, deployment to Agent Runtime, Cloud Run or GKE, publishing and observability. Works with agents-cli; local dev needs only an AI Studio key.
- [Claude Scholar](https://hebbmind.com/fr/skill/claude-scholar.md): [Skill] Semi-automated research workflow for computer science and AI researchers: ideation, Zotero literature management, experiment analysis and reports, paper writing and polishing, and rebuttals, with optional Obsidian knowledge base. 40+ skills; also installable as a Claude Code plugin.
- [PPTAgent Skill](https://hebbmind.com/fr/skill/pptagent.md): [Skill] From ISCAS's Chinese Information Processing Lab: Claude Code or Codex write slides from your brief, render each page to check layout, and export an editable PPTX, for lectures and academic talks. Needs macOS, Linux or WSL with Python (uv), npm and LibreOffice; install per the README.
- [Auto-Empirical Research Skills (AERS)](https://hebbmind.com/fr/skill/auto-empirical-research-skills.md): [Skill] Empirical social science skills from Stanford REAP and CoPaper.AI, bundling 77 in-house and third-party collections: topic selection, literature reviews, DID/RD/IV identification, regression tables in Python, Stata or R, robustness audits and paper writing. Stata flows need Stata installed.
- [Gemini API Dev](https://hebbmind.com/fr/skill/gemini-api-dev.md): [Skill] Teaches agents to code against the latest Gemini API and Python/TypeScript SDKs: multi-turn chat, function calling, structured output, and image and speech generation, while avoiding deprecated older models. Maintained by Google's Gemini team.
- [Gemini Skills](https://hebbmind.com/fr/skill/gemini-skills.md): [Skill] Gemini API development skills: gemini-api-dev (core API and SDKs), gemini-live-api-dev (real-time bidirectional audio/video streaming) and gemini-omni-flash-api (Omni video generation and editing), filling in APIs released after model training cutoffs. Maintained by Google's Gemini team.
- [NVIDIA Agent Skills](https://hebbmind.com/fr/skill/nvidia-skills.md): [Skill] NVIDIA's official, verified catalog of hundreds of skills covering CUDA-X libraries, NeMo training, NIM and Dynamo inference, RAG blueprints, Jetson, Omniverse and robotics simulation. The install adds only nvidia-skill-finder, which recommends other skills and installs them once you confirm.
- [Research Writing Assistant](https://hebbmind.com/fr/skill/research-writing-skill.md): [Skill] Thesis workflow for undergrad and grad students: Q&A to settle topic and outline, then chapter drafting, literature reviews, pre-submission self-review and AI-tone polishing, with modules for law, medicine and social sciences. Outputs Markdown or compilable LaTeX; won't fabricate citations.
- [Science Skills](https://hebbmind.com/fr/skill/science-skills.md): [Skill] About 40 research skills from Google DeepMind: search arXiv, PubMed and OpenAlex, query UniProt, PDB, ClinVar, ChEMBL and more, run AlphaGenome variant analysis and render structures in PyMOL. Requires uv; AlphaGenome needs an API key, and keys raise limits for OpenAlex, ClinVar and others.
- [Anti-Defensive Writing](https://hebbmind.com/fr/skill/anti-defensive-writing-skill.md): [Skill] Fixes defensive academic writing full of hedging and preemptive disclaimers, organizing abstract, introduction, experiments and conclusion around your strongest contribution. Also helps trim length and self-check before a rebuttal. English and Chinese versions, plus a prompt for any AI chat.
- [Microsoft Agent Skills](https://hebbmind.com/fr/skill/microsoft-skills.md): [Skill] Microsoft's official skill collection: 170+ skills focused on Azure SDKs (Python, .NET, TypeScript, Java, Rust) and Microsoft Foundry development, plus plugins, custom agents and MCP configs. Microsoft recommends picking skills per project rather than installing them all.
- [Cloudflare Agents SDK](https://hebbmind.com/fr/skill/agents-sdk.md): [Skill] Teaches agents to build, debug and review stateful AI agents with the Cloudflare Agents SDK: state sync, scheduled tasks, RPC, MCP servers, email and streaming chat, checking the latest official docs first. Maintained by Cloudflare.
- [OpenClaw Medical Skills](https://hebbmind.com/fr/skill/openclaw-medical-skills.md): [Skill] 869 medical skills compiled by FreedomIntelligence from a dozen open-source libraries: SOAP notes, discharge summaries, drug interactions, clinical guidelines, PubMed/FDA lookups, genomics and device regulation. Made for OpenClaw, usable elsewhere; some need API keys. Doctors must review output.
- [Deep Research Skills](https://hebbmind.com/fr/skill/deep-research-skills.md): [Skill] Two-stage deep research: drafts an editable outline for the topic, then parallel subagents search the web item by item and compile a Markdown report. Good for literature reviews, competitor research and due diligence. Install by copying files per the README, plus pip install pyyaml.
- [Rainman Translate Book](https://hebbmind.com/fr/skill/translate-book.md): [Skill] Translates entire books: splits PDF, DOCX or EPUB into chunks for parallel subagents, keeps terminology consistent, resumes interrupted runs and verifies with hashes, then outputs HTML, DOCX, EPUB or PDF. Needs Calibre, Pandoc and Python.
- [Medical Research Agent Skills](https://hebbmind.com/fr/skill/medical-research-skills.md): [Skill] 550+ medical research skills from AIPOCH: PubMed search strategy, study design and sample size, statistics and bioinformatics, journal writing and reviewer responses, all vetted by MedSkillAudit. Some need Python/R or database credentials; have researchers and clinicians review results.
- [Math Modeling Skill](https://hebbmind.com/fr/skill/math-modeling-skill.md): [Skill] A three-stage workflow for math modeling contests like MCM/ICM and CUMCM: analysis, solving and plotting in Python or MATLAB, and a Word (optionally LaTeX) paper, with stage-check subagents and OpenAlex plus AnySearch literature search. Generated papers are for reference only.
- [evil-read-arxiv](https://hebbmind.com/fr/skill/evil-read-arxiv.md): [Skill] Recommends daily papers from arXiv and Semantic Scholar by research interest, reads them and writes illustrated Obsidian notes and a paper graph; can also search venues like CVPR and NeurIPS. Needs Python 3, Obsidian, a vault path and an interests config; the web app needs an Anthropic API key.
- [My Claude Code Setup (claude-code-my-workflow)](https://hebbmind.com/fr/skill/claude-code-my-workflow.md): [Skill] Econometrician Pedro Sant'Anna's academic Claude Code setup (fork the repo to use it): Beamer/Quarto lecture slides, paper review and mock refereeing, R/Python analysis and replication packages, with specialist subagents and quality gates. Needs Git and Python; slides need XeLaTeX and Quarto.

Next page: https://hebbmind.com/fr/tools.md?page=2&type=skill&profession=algorithm%2Cresearch