# Tools

> Every listed resource, editors’ picks first. The filters below can be combined.

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Resources for ML / AI or Data engineering or Data analysis or Security or Research / Academia: 535 items.

> - ML / AI: Model training, evaluation and LLM application development.
> - Data engineering: Data pipelines, warehouse modeling, ETL and data quality.
> - Data analysis: Querying, statistical analysis, reporting and visualization.
> - Security: Code audits, vulnerability triage, penetration testing and compliance.
> - Research / Academia: Literature search and reviews, experimental data analysis, paper writing and submission.

- [Rill](https://hebbmind.com/ja/cli/rill.md): [CLI] Open-source, agent-friendly BI: define metrics and dashboards in YAML and SQL, and rill init generates project instructions and MCP config for Claude Code so agents can build business dashboards and answer questions in natural language. Local use is free; publishing to Rill Cloud needs an account.
- [Paper Search MCP](https://hebbmind.com/ja/mcp/paper-search-mcp.md): [MCP] Unified search across 20+ academic sources including arXiv, PubMed, bioRxiv, Semantic Scholar and OpenAlex, returning deduplicated, normalized results and downloading full text via open-access channels first. Most sources need no API key.
- [JADX AI MCP](https://hebbmind.com/ja/mcp/jadx-ai-mcp.md): [MCP] A JADX decompiler plugin plus companion MCP server that lets agents read an APK's classes, methods, Smali and resources to assist Android reverse engineering and vulnerability hunting. Requires JADX-GUI and uv.
- [EdgarTools](https://hebbmind.com/ja/mcp/edgartools.md): [MCP] Python library with a built-in MCP server for US SEC EDGAR data: search 10-K, 10-Q, 8-K and other filings and read XBRL-standardized financial statements, Form 4 insider trades and 13F holdings. Free with no API key; just set an EDGAR_IDENTITY.
- [Korean Law MCP](https://hebbmind.com/ja/mcp/korean-law-mcp.md): [MCP] Searches Korean statutes, case law, administrative rules and local ordinances via the Korean Ministry of Government Legislation's Open API, verifies whether cited provisions and cases exist, and compares versions over time. Needs a free API key and Node.js; have a lawyer review results.
- [x64dbg MCP Server](https://hebbmind.com/ja/mcp/x64dbg-mcp-server.md): [MCP] A native x64dbg plugin that works as an MCP server, exposing dozens of debugging tools: agents can set breakpoints, step through code, read and write memory, analyze PE structure and locate the OEP of packed binaries. Windows only; install the plugin in x64dbg, then connect with a token.
- [Bright Data MCP](https://hebbmind.com/ja/mcp/brightdata-mcp.md): [MCP] Bright Data's official MCP: web search (Google, Bing, Yandex), any page to Markdown, structured data extraction from e-commerce, social and other platforms, and remote browser control. Needs an API token; includes 5,000 free requests a month.
- [ScanCode Toolkit](https://hebbmind.com/ja/cli/scancode-toolkit.md): [CLI] Scans codebases and dependencies for open-source licenses, copyright notices and package manifests, detecting licenses by full-text matching, with output in JSON, SPDX, CycloneDX and more, for open-source compliance reviews.
- [Perplexity API Platform MCP Server](https://hebbmind.com/ja/mcp/modelcontextprotocol.md): [MCP] Perplexity's official MCP with four tools: web search, grounded Q&A, deep research and reasoning, available remotely or run locally. Requires a Perplexity API key.
- [shot-scraper](https://hebbmind.com/ja/cli/shot-scraper.md): [CLI] Simon Willison's website screenshot CLI: batch screenshots from YAML, record demo videos, export PDF and HTML, run JavaScript in pages to extract data, and dump accessibility trees. Built on Playwright; install a browser on first use.
- [MFLUX](https://hebbmind.com/ja/cli/mflux.md): [CLI] Runs open image models like FLUX, Qwen Image and Z-Image locally on a Mac: text-to-image, reference-based edits, inpainting and upscaling, all on-device. Needs Apple Silicon and uv; the first run downloads models and is slow. Check each model's license before commercial use.
- [Claude Scientific Writer](https://hebbmind.com/ja/plugin/claude-scientific-writer.md): [Plugin] A research-writing plugin from K-Dense: searches the literature in real time before drafting, then produces papers, reviews, grant proposals, posters and slides with verifiable citations and figures. Literature search needs a Parallel API key; PDF output needs LaTeX.
- [Apify Agent Skills](https://hebbmind.com/ja/skill/apify-agent-skills.md): [Skill] Apify's official skill collection: picks from 130+ curated Actors to scrape public data from social networks, maps, e-commerce sites and more, and can also build, package and deploy Actors. Needs an Apify account; a free tier is available.
- [Deep Research Skills](https://hebbmind.com/ja/skill/deep-research-skills.md): [Skill] Two-stage deep research: drafts an editable outline for the topic, then parallel subagents search the web item by item and compile a Markdown report. Good for literature reviews, competitor research and due diligence. Install by copying files per the README, plus pip install pyyaml.
- [Tavily MCP Server](https://hebbmind.com/ja/mcp/tavily-mcp.md): [MCP] Four tools for real-time web search, page content extraction, site mapping and full-site crawling, available as a remote server or run locally. Maintained by Tavily; needs an API key or OAuth sign-in, and a free account is available.
- [PaperBanana](https://hebbmind.com/ja/mcp/paperbanana.md): [MCP] Turns a paper's method description (text or PDF) or data files into publication-ready diagrams and plots, with several AI reviewer roles refining each figure. Needs an OpenAI or Gemini API key (billed per image), Python and uv. A community reimplementation, not by the original paper's authors.
- [MiniMax CLI (mmx)](https://hebbmind.com/ja/cli/minimax-ai-cli.md): [CLI] MiniMax's official CLI, built for agents: chat with MiniMax models from the terminal and generate images, video and speech, plus speech transcription, image understanding and web search. Works with the international platform. Requires a MiniMax Token Plan subscription.
- [sqlite-utils](https://hebbmind.com/ja/cli/sqlite-utils.md): [CLI] A CLI and Python library by Simon Willison: imports JSON and CSV straight into SQLite with automatic table creation, runs in-memory SQL queries over files, and supports full-text search and table transformations.
- [Rainman Translate Book](https://hebbmind.com/ja/skill/translate-book.md): [Skill] Translates entire books: splits PDF, DOCX or EPUB into chunks for parallel subagents, keeps terminology consistent, resumes interrupted runs and verifies with hashes, then outputs HTML, DOCX, EPUB or PDF. Needs Calibre, Pandoc and Python.
- [OSS Review Toolkit (ORT)](https://hebbmind.com/ja/cli/ort.md): [CLI] The Linux Foundation's open-source compliance toolchain: analyzes project dependencies, scans licenses and copyrights, checks known vulnerabilities, flags policy violations and generates SBOMs and notice files. Needs Java 25 or Docker and ideally 8 GB RAM; have legal review license findings.
- [Intercom CLI (Printing Press)](https://hebbmind.com/ja/cli/intercom.md): [CLI] Unofficial Intercom CLI built with Printing Press, covering the full REST API: sync conversations and contacts for offline search, bulk-tag conversations about one incident, see customer overviews and SLA reports, and pull or push help articles. US, EU and AU regions; needs an access token.
- [MCP Memory Service](https://hebbmind.com/ja/mcp/mcp-memory-service.md): [MCP] Self-hostable long-term memory for agents, offering MCP, a REST API and a web dashboard: semantic search, knowledge graph and automatic memory consolidation. Embeddings are computed locally; choose SQLite, Cloudflare or Milvus as the backend.
- [Medical Research Agent Skills](https://hebbmind.com/ja/skill/medical-research-skills.md): [Skill] 550+ medical research skills from AIPOCH: PubMed search strategy, study design and sample size, statistics and bioinformatics, journal writing and reviewer responses, all vetted by MedSkillAudit. Some need Python/R or database credentials; have researchers and clinicians review results.
- [stock-api](https://hebbmind.com/ja/cli/stock-api.md): [CLI] Fetches US, Hong Kong and China A-share stock data with zero runtime dependencies: real-time quotes, daily, weekly and monthly candles and search as JSON, falling back across Tencent, Sina and Eastmoney sources. Also runs as an MCP server. Unofficial public APIs, no stability guarantee.
- [Math Modeling Skill](https://hebbmind.com/ja/skill/math-modeling-skill.md): [Skill] A three-stage workflow for math modeling contests like MCM/ICM and CUMCM: analysis, solving and plotting in Python or MATLAB, and a Word (optionally LaTeX) paper, with stage-check subagents and OpenAlex plus AnySearch literature search. Generated papers are for reference only.
- [Open-WebSearch](https://hebbmind.com/ja/mcp/open-websearch.md): [MCP] Multi-engine web search MCP with no API key, supporting Bing, DuckDuckGo, Brave, Baidu, Sogou, CSDN, Juejin and more; also fetches page content, CSDN articles and GitHub READMEs. Ships a CLI and a local server too.
- [CC Safety Net](https://hebbmind.com/ja/plugin/cc-safety-net.md): [Plugin] Before tool calls run, blocks destructive Git and file commands (git reset --hard, rm -rf) and access to sensitive files like SSH keys and .env. Parses command semantics, so bash -c wrappers are caught too. Works with Claude Code, Codex and other coding CLIs; needs Node.js 18+.
- [Papis](https://hebbmind.com/ja/cli/papis.md): [CLI] Command-line reference and bibliography manager: add papers by DOI with metadata fetched automatically, search by author, title or tag, and import or export BibTeX. Each entry is a readable YAML file that agents can read and write easily; a web UI is included. Needs Python.
- [evil-read-arxiv](https://hebbmind.com/ja/skill/evil-read-arxiv.md): [Skill] Recommends daily papers from arXiv and Semantic Scholar by research interest, reads them and writes illustrated Obsidian notes and a paper graph; can also search venues like CVPR and NeurIPS. Needs Python 3, Obsidian, a vault path and an interests config; the web app needs an Anthropic API key.
- [ToolUniverse](https://hebbmind.com/ja/mcp/tooluniverse.md): [MCP] From Harvard Medical School's Zitnik Lab: one MCP connecting 1,000+ scientific tools and databases for drugs and targets, genes and proteins, clinical trials, FDA data and PubMed, for biomedical and drug research. Runs with uv; some sources need API keys; medical conclusions need expert review.
- [MATLAB MCP Server](https://hebbmind.com/ja/mcp/matlab-mcp-core-server.md): [MCP] MathWorks' official server that lets agents start your local MATLAB, write and run scripts and unit tests, and check code style and potential errors, for computing, simulation and data analysis. Needs a licensed MATLAB R2021a+ and the downloaded server binary.
- [MCPVault](https://hebbmind.com/ja/mcp/mcpvault.md): [MCP] Lets agents read and write your local Obsidian vault directly: search notes, append to daily notes, tidy tags and properties, and summarize reading or research notes by topic. No need to open Obsidian or install plugins; access is limited to the vault and can be read-only. Needs Node.js 20+.
- [My Claude Code Setup (claude-code-my-workflow)](https://hebbmind.com/ja/skill/claude-code-my-workflow.md): [Skill] Econometrician Pedro Sant'Anna's academic Claude Code setup (fork the repo to use it): Beamer/Quarto lecture slides, paper review and mock refereeing, R/Python analysis and replication packages, with specialist subagents and quality gates. Needs Git and Python; slides need XeLaTeX and Quarto.
- [MCP Server for WinDbg](https://hebbmind.com/ja/mcp/mcp-windbg.md): [MCP] Lets agents drive WinDbg's CDB/KD to analyze crash dumps, debug user-mode processes remotely and debug kernels, and triage many dumps in a batch. Windows only; requires WinDbg or Debugging Tools for Windows.
- [NotesMD CLI](https://hebbmind.com/ja/cli/notesmd-cli.md): [CLI] Reads and writes Obsidian vaults from the terminal: search, view, create, edit, move and delete notes, and manage frontmatter and daily notes, without Obsidian running. Good for agents maintaining a personal knowledge base. Formerly Obsidian CLI.
- [DuckDuckGo Search MCP Server](https://hebbmind.com/ja/mcp/duckduckgo-mcp-server.md): [MCP] Web search through DuckDuckGo plus fetching and parsing page content, with built-in rate limiting and LLM-friendly result formatting. No API key needed; runs with a single uvx command.
- [Qdrant MCP Server](https://hebbmind.com/ja/mcp/mcp-server-qdrant.md): [MCP] Uses the Qdrant vector database as a semantic memory layer for agents: store information and retrieve it by meaning, connecting to a remote instance or a local path, with FastEmbed generating embeddings by default. Maintained by Qdrant.
- [Brave Search MCP Server](https://hebbmind.com/ja/mcp/brave-search-mcp-server.md): [MCP] Brings the Brave Search API to agents: web, news, image, video and local business and place search, plus LLM-ready page context and AI summaries. Maintained by Brave; needs an API key.
- [OpenContracts](https://hebbmind.com/ja/mcp/opencontracts.md): [MCP] Self-hosted open-source platform for contract and legal document analysis: detects cited laws and builds a citation graph, and its MCP server lets agents search the corpus, read texts and annotations, and follow citations. Deploy your own instance with Docker; have a lawyer review results.
- [ROS MCP Server](https://hebbmind.com/ja/mcp/ros-mcp-server.md): [MCP] Connects LLMs to ROS and ROS 2 robots: publish and subscribe to topics, call services and actions, set parameters, and read sensor and robot state, without changing robot code. The robot side needs rosbridge running.
- [daymade Claude Code Skills](https://hebbmind.com/ja/plugin/claude-code-skills.md): [Plugin] A plugin marketplace with dozens of plugins: an enhanced skill-creator, scrapers for Bilibili, Douban and Feishu docs, China A-share news and US stock fundamentals, WeCom notifications, deep research and fact-checking, with docs in English and Chinese.
- [daymade-audio](https://hebbmind.com/ja/plugin/daymade-audio.md): [Plugin] Audio plugin suite: transcription with local Qwen3-ASR or Whisper (MLX on Apple Silicon), speaker diarization, transcript correction, structured meeting notes and StepFun TTS. StepFun ASR and TTS need an API key.
- [Academic Paper Skills](https://hebbmind.com/ja/skill/academic-paper-skills.md): [Skill] Two-stage paper skills: planning studies the style of your target preprint server (e.g. PhilArchive, arXiv), finds gaps in the literature and scores a seven-dimension mock review; writing drafts and checks each chapter from the outline. Suits philosophy and interdisciplinary work; needs Python 3.
- [Claude Video Vision](https://hebbmind.com/ja/plugin/claude-video-vision.md): [Plugin] Lets Claude Code watch videos: extracts frames with ffmpeg and transcribes timestamped audio from local files or YouTube links, to review footage, summarize lectures or find on-screen text. Needs Node.js 20+ and ffmpeg (yt-dlp for YouTube); transcribe with local Whisper or a Gemini/OpenAI key.
- [paper-craft-skills](https://hebbmind.com/ja/skill/paper-craft-skills.md): [Skill] Turns a paper (arXiv link or PDF) into method diagrams, slides with a generated image per page (PPTX/PDF export) and an in-depth HTML explainer with formulas, for lab meetings and lectures. No API key; images use Codex's built-in generator or, in Claude Code, a separate image skill.
- [Academic Presentations Skill](https://hebbmind.com/ja/skill/academic-pptx-skill.md): [Skill] Builds conference talks, lab meeting decks, defenses, lectures and grant reports to academic norms: assertion-style titles, slides ordered by the argument, one cited chart per results slide, and a closing conclusions slide. Pair with Anthropic's pptx skill; on claude.ai, enable code execution.
- [MySQL MCP Server](https://hebbmind.com/ja/mcp/mysql-mcp-server.md): [MCP] Gives agents controlled access to MySQL: list databases and tables, inspect schemas and sample data, and run SQL, with multi-database mode, SSL and SSH tunnels. Configure your own database user, ideally with least privilege.
- [Mirobody](https://hebbmind.com/ja/mcp/mirobody.md): [MCP] Self-hosted engine that maps lab results, checkup reports and wearable data to standard metrics so agents can chart trends, citing the source file for every number. uvx mirobody mcp gives the coding tools; full records need Docker and an LLM API key. A doctor should review results.
- [Tutor Skills](https://hebbmind.com/ja/skill/tutor-skills.md): [Skill] Two companion skills: /tutor-setup turns PDFs, lecture notes or a codebase into an Obsidian study vault with concept notes and practice questions, and /tutor quizzes you with multiple-choice questions on weak spots and tracks mastery. For students reviewing or self-studying; best viewed in Obsidian.
- [nbgrader](https://hebbmind.com/ja/cli/nbgrader.md): [CLI] Jupyter's official tool for notebook assignments: once teachers mark up questions and solutions, the CLI generates student versions, collects submissions, auto-grades and produces feedback. Suits programming and data courses. Needs Python and Jupyter; assignments must use nbgrader's markup.

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