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Deep research assistant that runs locally with a built-in MCP server: searches arXiv, PubMed, Wikipedia and more over multiple rounds and writes cited reports. Needs Python 3.12+, uv and an LLM (local Ollama or an API key); web search needs SearXNG or similar. Runs take minutes to half an hour.

Terminal tool for exploring and wrangling tabular data: opens dozens of formats including CSV, JSON, Excel and SQLite for filtering, sorting, pivots and frequency counts. --batch mode replays actions headlessly or converts file formats.

Publication-quality matplotlib plotting skill from a Yale PhD student: bar charts, trends, heatmaps and multi-panel figures with consistent fonts, colors and export settings, plus real plotting scripts from papers published in venues like Nature Machine Intelligence. Needs Python.

Uses a strong model to audit your codebase and list evidence-backed issues across correctness, security, performance and testing, writes a plan a cheaper model can execute, and reviews the results. It never edits code itself. By shadcn.

Say build a harness for this project and it designs a domain-specific agent team, generating subagent definitions, companion skills and orchestration, validates them and keeps evolving them from feedback. Supports workflow orchestration, persistent agent teams and subagent delegation.

Manage database schemas as code: declare the desired schema in SQL, HCL or your ORM and Atlas plans, lints and applies migrations, and can export existing databases as HCL, SQL or Mermaid ER diagrams. Supports PostgreSQL, MySQL and a dozen other databases.

Manages multiple Claude Code, Codex, Gemini and Aider sessions in parallel from one terminal: each task gets its own git worktree, can run in the background, and changes are reviewed before merging. Requires tmux and gh.

Converts the output of 100+ commands such as dig, ps, ls and ifconfig, plus common file formats, into JSON so agents can parse it reliably with jq or scripts. Also usable as a Python library.

Free remote MCP service that turns any GitHub repo or GitHub Pages site into a docs endpoint, so agents can read up-to-date docs and search code on demand and hallucinate fewer APIs. No sign-up or install; self-hosting is also possible.

Spec-driven project management for software: guides brainstorming into a PRD, breaks it into epics and dependent tasks synced as GitHub Issues, answers standup, next-step and blocker questions, and can dispatch several agents to code in parallel. Needs Git, an authenticated gh CLI and a GitHub repo.

Offline speech toolkit for Apple Silicon Macs: CLI text-to-speech (including Chinese and voice cloning) and speech-to-text, for voicing lessons and explainer videos or transcribing lectures and interviews, with data staying local. Needs an M-series Mac and Python 3.10+; MP3 export needs ffmpeg.

HTTP client CLI that reimplements HTTPie's syntax in Rust with a focus on performance; key-value pairs on the command line are sent as JSON by default, making it quick to debug REST APIs.

Moonshot AI's official terminal coding agent: reads and edits code, runs commands, searches files and fetches web pages, with video input, MCP, plugins, subagents and hooks, plus Zed and JetBrains integration via ACP. Needs a Kimi sign-in or Moonshot API key. Replaces the archived Kimi CLI.

Query, modify and convert JSON, YAML, TOML, XML, CSV, HCL, INI and more with one selector syntax, editing config files in place or converting between formats, handy for agents handling structured data in scripts. A single dependency-free binary that works much like jq or yq.

Query cloud resources and SaaS APIs live with SQL: plugins map AWS, Azure, GCP, GitHub, Kubernetes and other services to tables you can select from directly, no ETL needed. A single binary with Postgres built in.

Turns Peng Sida's public research-writing notes into a skill: revises abstracts, introductions, methods and experiments of ML/CV/NLP papers from a reviewer's view, checks that each claim has experimental evidence, and runs a pre-submission self-check. Pure methodology, no API key.

From Trail of Bits: reviews PRs, commits or diffs from a security angle, tracing history with git blame, estimating blast radius by caller count and checking test coverage gaps, then writes a Markdown review report.

Diffusion model inference in pure C/C++: one sd-cli command runs SD, FLUX, Qwen Image, Wan and more locally to create or edit images and short videos, with Metal acceleration on Mac. No cloud needed; bring your own model weights and use a release binary or build from source.

Scrapes web pages into Markdown or structured data, with full-site crawling, sitemaps, web search and interaction with dynamic pages. Maintained by Firecrawl; the cloud needs an API key (self-hosting is possible), and the keyless hosted endpoint only offers scrape, search and parse.

Anthropic's reference implementation for finding and fixing vulnerabilities: Claude Code skills for threat modeling, static scanning, triage and patching, plus an autonomous recon-to-patch pipeline (C/C++ memory bugs by default; needs Docker and gVisor). No longer maintained.

Turns a Notion PRD or feature spec into an implementation plan page and tasks, flagging open questions and linking spec, plan and tasks while tracking progress. From OpenAI's official plugin repo (developer: Notion); needs the Notion MCP connected.

OpenAI's official Codex plugin that uses the local API of the Zotero desktop app to search your library, export BibTeX, insert citations into LaTeX or Markdown drafts, and import new references after you confirm. Requires Zotero desktop.

OpenAI's official life-science skills: 49 skills query public databases such as UniProt, ClinVar, gnomAD and AlphaFold through Python scripts, with a router skill that breaks down questions, normalizes entities and compiles sourced evidence. Written mainly for Codex.

Tests and debugs a locally running frontend with Codex's Browser plugin or Playwright: checks blank pages, framework and console errors, captures screenshots, re-verifies after fixes and writes a QA report. Maintained by OpenAI; formerly playwright-interactive in openai/skills.