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The Docling project's official MCP: converts PDF, Word, PowerPoint and more into structured documents with layout and table detection and OCR for scans, and lets agents build new documents paragraph by paragraph and export Markdown. Local mode needs Python and uv, or use your own Docling Serve.

Rewrites a paper for a target journal: give it 5-8 papers from that journal (plus optional field or lab examples), it builds an editable style guide for your manuscript, then rewrites section by section to the journal's conventions with a change log. PDF input needs a converter such as MinerU.

Shopify's official CLI: scaffold, develop locally and deploy Shopify apps, extensions, Functions and themes, and build and host Hydrogen custom storefronts. Requires Node.js.

A research plugin for Claude Code: commands like /omp:survey, /omp:experiment and /omp:write chain literature review, topic selection, experiments, writing and self-review, with 5 specialized agents and 34 research skills that remember project progress across sessions. Experiments lean toward ML.

dbt Labs' official plugin marketplace with dbt and dbt-migration plugins: write models and unit tests, build semantic-layer metrics, govern with dbt Mesh, debug failed jobs, and handle version upgrades and cross-platform migrations. Most skills need an existing dbt project.

dbt Labs' official skills: write and edit dbt models, add unit tests and docs, set up the MetricFlow semantic layer, debug failed jobs, and handle dbt version upgrades and cross-platform migrations. Most skills need dbt installed and an existing project.

21 English writing rules (12 from The Elements of Style, Orwell, Pinker and other classics, 9 from observed LLM habits) for clearer, leaner papers, grant proposals, design docs and documentation. Expository English only; not for fiction or marketing copy.

Two skills for before and after peer review: review-revision checks a manuscript as a senior reviewer would and plans section-by-section revisions; rebuttal-response triages reviewer comments, plans extra evidence and drafts point-by-point replies. Takes PDF, LaTeX, Word or Markdown.

The five-agent PaperOrchestra pipeline (outline, figures, literature review, section writing, polishing) as skills: turns research ideas, experiment logs and a conference template into a LaTeX paper and checks citations via Semantic Scholar. Needs Python; verify the draft yourself.

Economics writing skill built on 50+ guides (Cochrane, McCloskey and others): shapes abstracts, introductions and conclusions by paper type and 13 identification strategies such as DiD, IV and RDD, simulates three referee scores and flags citations to verify.

Helps agents write geospatial SQL for PostGIS, DuckDB, BigQuery and Snowflake: inspect schemas and keep query costs in check, then render results as interactive maps to review and correct. Needs Python and your own database or warehouse; maps use Dekart, which can run locally in Docker.

Official SonarSource server: connects to SonarQube Server or Cloud so agents can query code issues, quality gates, security hotspots and dependency risks, and analyze file contents directly. Needs a SonarQube token; Docker is the recommended way to run it.

Compares two versions of a LaTeX manuscript and produces a .tex that marks additions and deletions in color and strikethrough; compile it for a tracked-changes PDF to show reviewers, or diff versions from Git history. Ships with TeX Live and MiKTeX; needs Perl.

Official Firecrawl skill: drives the Firecrawl CLI to search, scrape, map site URLs, batch-crawl, interact with pages and monitor changes, returning LLM-ready Markdown. Search and scrape have a rate-limited free tier; crawling and monitoring need an account or self-hosted instance.

Firecrawl's official CLI: scrape, search, map and crawl sites and interact with pages in a browser from the terminal, with Markdown output; can also install companion skills for coding agents. Needs a Firecrawl account or API key, or point it at a self-hosted instance.

Searches about 30 biomedical sources, including PubMed, ClinicalTrials.gov, ClinVar and OncoKB, with one command syntax, covering literature, clinical trials, genetic variants, drugs and pathways. Ships as both a CLI and an MCP server.

Manage Postgres databases on Neon in natural language: create projects and branches, run SQL, and use branches for migrations and query tuning. Remote server hosted by Neon with OAuth or API key auth and a read-only mode; Neon recommends it for development only.

Turns web pages, long PDFs, Word files, images or code into tutor-style study notes: Markdown notes plus searchable HTML knowledge cards with concept breakdowns and mind maps. Needs Python 3.8+, plus Chrome for some sites; the optional tutor chat needs an OpenAI-compatible API key.

Generates flowcharts, sequence diagrams, class diagrams and other charts from Mermaid syntax with configurable theme and background, exporting SVG or PNG files or a mermaid.ink share link. Validates syntax so the model can fix errors over several turns.

Redis's official MCP server: read and write strings, hashes, lists, streams, JSON and other data structures in natural language, with vector indexing and search and pub/sub. Bring your own Redis instance; runs via uvx.

PubMed plugin from Anthropic's life sciences marketplace: connects to the US National Library of Medicine's remote MCP to search biomedical literature and research papers. No account needed.

Anthropic's official research skill built on Fischbach and Walsh's problem-selection framework (Cell): a conversational guide to refining project ideas, assessing risk and success criteria, unblocking stalled research and choosing directions. No setup or account needed.

Official BioRender plugin in Anthropic's life sciences marketplace: connects Claude Code to BioRender's scientific icons, templates and figures to find assets and make paper figures, lecture slides and talk graphics. Needs a free BioRender account; authorize it in /plugin after installing.

Anthropic's official life sciences plugin marketplace: install MCP plugins such as PubMed, BioRender, Synapse, ChEMBL and 10x Genomics, plus research skills for single-cell RNA QC, Nextflow pipelines and scvi-tools. Some data sources need an account or subscription.