# Tools

> Every listed resource, editors’ picks first. The filters below can be combined.

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Resources for ML / AI or Data engineering or Data analysis or Research / Academia: 470 items.

> - ML / AI: Model training, evaluation and LLM application development.
> - Data engineering: Data pipelines, warehouse modeling, ETL and data quality.
> - Data analysis: Querying, statistical analysis, reporting and visualization.
> - Research / Academia: Literature search and reviews, experimental data analysis, paper writing and submission.

- [Freqtrade](https://hebbmind.com/ru/cli/freqtrade.md): [CLI] Open-source crypto trading framework: download market data, backtest and optimize strategies, and paper trade from the CLI while agents iterate on strategies. Docker recommended; strategies need Python and live trading needs exchange API keys. Backtests don't guarantee returns.
- [goose](https://hebbmind.com/ru/cli/goose.md): [CLI] General-purpose AI agent that runs on your machine, with a desktop app, CLI and API. Written in Rust, works with 15+ model providers and connects to 70+ extensions via MCP. Originally from Block, now part of the Linux Foundation's AAIF.
- [Scientific Writing (K-Dense)](https://hebbmind.com/ru/skill/scientific-writing.md): [Skill] Drafts, revises and reviews research manuscripts, tying every fact and number to verified evidence and covering reporting guidelines, authorship, AI disclosure and confidentiality; explicitly forbids fabricated citations or data. Includes offline check scripts; no API key needed.
- [Literature Review (K-Dense)](https://hebbmind.com/ru/skill/literature-review.md): [Skill] Systematic literature reviews following PRISMA and similar standards: searches PubMed, arXiv, bioRxiv and other databases, verifies each citation's DOI, and outputs Markdown and PDF in APA, Nature or other styles. Main web search uses parallel-cli and needs a Parallel account.
- [Statistical Analysis](https://hebbmind.com/ru/skill/statistical-analysis.md): [Skill] Guides agents to the right statistical method for research data: t-tests, ANOVA, chi-square, regression and Bayesian analysis, checking assumptions, computing effect sizes and power, and reporting results in APA format. Python-based (pingouin, statsmodels); by K-Dense.
- [Scanpy Single-Cell Analysis](https://hebbmind.com/ru/skill/scanpy.md): [Skill] Teaches agents standard single-cell RNA-seq analysis with Scanpy: QC, normalization, PCA/UMAP, clustering, differential expression and plots, with ready-to-run pipeline scripts and guidance on converting Seurat and other R objects to h5ad. Needs Python 3.12+; by K-Dense.
- [Database Lookup](https://hebbmind.com/ru/skill/database-lookup.md): [Skill] Unified database lookup skill from K-Dense's scientific collection: reproducibly queries about 80 public database APIs such as PubChem, UniProt, ChEMBL, ClinicalTrials.gov and FRED, returning traceable results with endpoints, parameters and count checks. Some need API keys.
- [Academic Research Skills](https://hebbmind.com/ru/plugin/academic-research-skills.md): [Plugin] End-to-end academic paper plugin: deep research and literature review, writing, multi-perspective simulated peer review, revision and finalization, pausing for your approval at each stage, with built-in citation verification and integrity checks. Licensed CC BY-NC.
- [Academic Research Skills](https://hebbmind.com/ru/skill/academic-research-skills.md): [Skill] Skill suite for the whole academic research workflow: deep research (including PRISMA systematic reviews), paper writing, multi-perspective peer review and revision, pausing for human approval at each stage, with citation and integrity checks. CC BY-NC, non-commercial only.
- [whisper.cpp](https://hebbmind.com/ru/cli/whisper-cpp.md): [CLI] C/C++ port of OpenAI's Whisper speech recognition model that transcribes audio offline and outputs subtitles. Runs on CPU, with Apple Silicon and various GPU acceleration. Download a ggml-format model first.
- [DeepTutor](https://hebbmind.com/ru/cli/deeptutor.md): [CLI] Personalized tutoring system from HKU's HKUDS: build a knowledge base from textbooks for Q&A, step-by-step solutions and quizzes, for teachers and self-learners. The deeptutor command outputs JSON for agents like Claude Code. Needs Python 3.11+, Node.js 20+ and an LLM API key.
- [Obsidian Skills](https://hebbmind.com/ru/plugin/obsidian-skills.md): [Plugin] From Obsidian CEO Steph Ango (kepano): teaches agents to write Obsidian-flavored Markdown, Bases and Canvas files and work with vaults through the Obsidian CLI, plus skills like web page content extraction. Also installable into Codex and other agents via npx skills.
- [Obsidian Skills](https://hebbmind.com/ru/skill/obsidian-skills.md): [Skill] Teaches agents to read and write Obsidian vaults: Obsidian-flavored Markdown, Bases data views, JSON Canvas and the Obsidian CLI, plus Defuddle web content extraction and Knap template rendering. Maintained by Obsidian CEO kepano.
- [Ruff](https://hebbmind.com/ru/cli/ruff.md): [CLI] Astral's extremely fast Python linter and formatter written in Rust, replacing Flake8, isort and Black, with 900+ built-in rules and auto-fix.
- [tmux](https://hebbmind.com/ru/cli/tmux.md): [CLI] Terminal multiplexer: run multiple sessions and panes in one terminal, with processes surviving disconnects. Agents use it to host long-running tasks and drive interactive programs, and many parallel multi-agent session tools build on it.
- [Qlib](https://hebbmind.com/ru/cli/qlib.md): [CLI] Microsoft's open-source AI quant investment research platform: the qrun command runs dataset building, model training, backtesting and evaluation from a YAML config, with many benchmark models. The official dataset is paused, so prepare market data per the README first.
- [Umi-OCR](https://hebbmind.com/ru/cli/umi-ocr.md): [CLI] Free, open-source offline OCR desktop app for screenshots, batch images, scanned PDFs and QR codes, callable via the umi-ocr CLI or an HTTP API (the CLI relies on the app's local HTTP service, on by default). Windows and Linux only.
- [Pandoc](https://hebbmind.com/ru/cli/pandoc.md): [CLI] Universal document converter between dozens of formats including Markdown, Word, HTML, LaTeX and EPUB, with templates, citations and Lua filters. PDF output uses LaTeX by default, which you install separately.
- [Math Olympiad](https://hebbmind.com/ru/plugin/math-olympiad.md): [Plugin] Official Anthropic plugin that solves competition math such as IMO and Putnam problems, with adversarial checks by an independent verifier that only sees the clean proof. Gives up explicitly rather than bluffing when unsure, and outputs LaTeX/PDF once verified.
- [MCP Server Dev](https://hebbmind.com/ru/plugin/mcp-server-dev.md): [Plugin] Designs and builds MCP servers: first picks a deployment model among remote HTTP, MCPB bundles and local stdio, then guides tool design, auth and in-chat interactive components. Maintained by Anthropic.
- [Session Report](https://hebbmind.com/ru/plugin/session-report.md): [Plugin] Official Anthropic plugin that reads local session logs in ~/.claude/projects and generates an interactive HTML usage report covering tokens, cache hit rate, subagents, skills and the most expensive prompts, with optimization tips. Needs Node.js.
- [Skill Creator](https://hebbmind.com/ru/plugin/skill-creator.md): [Plugin] Creates or improves Agent Skills from scratch: writes eval cases to test them, runs benchmarks with variance analysis, and tunes descriptions for more accurate triggering. Maintained by Anthropic.
- [Pyright LSP](https://hebbmind.com/ru/plugin/pyright-lsp.md): [Plugin] Connects Claude Code to the Pyright language server for static type checking and code intelligence in Python. Install pyright first with npm, pip or pipx. Official Anthropic plugin.
- [project-artifact](https://hebbmind.com/ru/plugin/project-artifact.md): [Plugin] Official Anthropic plugin that builds a shareable status page for big multi-track projects such as migrations, launches or research: goals, workstream order, next steps and risks; say 'refresh' to update the same link. Needs a claude.ai login; Artifacts are a beta for Team and Enterprise plans.
- [Fabric](https://hebbmind.com/ru/cli/fabric.md): [CLI] Turns common prompts such as summarizing, extracting insights and rewriting into reusable patterns you pipe text, web pages or YouTube transcripts through, using many model providers or local Ollama. Can also run as a REST API. Run fabric --setup first to configure models.
- [aria2](https://hebbmind.com/ru/cli/aria2.md): [CLI] Lightweight multi-protocol command-line downloader that fetches in parallel segments from multiple sources over HTTP(S), FTP, SFTP, BitTorrent and Metalink. Resumes downloads, reads URLs in bulk from text files and offers a JSON-RPC interface for scripts or agents.
- [Manim](https://hebbmind.com/ru/cli/manim.md): [CLI] Engine for math and explainer animations in Python (Community Edition, ManimCE): write scenes and render them to video with the manim command, letting agents create teaching and science animations. On macOS install cairo and pkg-config first; formulas need LaTeX.
- [Quantitative Trading](https://hebbmind.com/ru/plugin/quantitative-trading.md): [Plugin] Quant trading plugin from the wshobson/agents marketplace: quant analyst and risk manager subagents plus backtesting and risk metrics skills for strategy backtests, portfolio optimization and risk measures like VaR, Sharpe ratio and max drawdown. Needs local Python; not investment advice.
- [Data Engineering](https://hebbmind.com/ru/plugin/data-engineering.md): [Plugin] Data engineering plugin from the wshobson/agents marketplace: a data engineer subagent, a data pipeline command, and skills for Airflow DAGs, dbt transformations, Spark tuning and data quality, to help build ETL and data warehouses.
- [Business Analytics](https://hebbmind.com/ru/plugin/business-analytics.md): [Plugin] Business analytics plugin from the wshobson/agents marketplace: KPI dashboard design and data storytelling skills plus a business analyst subagent to choose metrics, plan dashboard layouts and turn data into reports executives or investors understand. Methods and templates only; no data connections.
- [LLM Application Dev](https://hebbmind.com/ru/plugin/llm-application-dev.md): [Plugin] Plugin for building LLM apps: LangGraph agents with memory and tool use, hybrid-search RAG, vector index tuning, prompt optimization and LLM evaluation. Includes 3 subagents and 8 skills.
- [Machine Learning Ops](https://hebbmind.com/ru/plugin/machine-learning-ops.md): [Plugin] MLOps plugin from the wshobson/agents marketplace: data scientist, ML engineer and MLOps engineer subagents and a /ml-pipeline command that runs the pipeline in phases from data analysis and training to deployment and monitoring, plus ML pipeline and recommender system skills.
- [audit-xls](https://hebbmind.com/ru/skill/audit-xls.md): [Skill] Official Anthropic finance skill that checks Excel for formula errors like #REF!, numbers hardcoded in formulas, sum ranges that miss rows and mixed units; on full models it also checks the balance sheet balances and cash ties. Lists issues and fixes and asks before changing anything.
- [clean-data-xls](https://hebbmind.com/ru/skill/clean-data-xls.md): [Skill] Official Anthropic skill for cleaning messy Excel exports: trims spaces, standardizes case and dates, converts text numbers, dedupes, and flags mixed types, garbled text and errors. Keeps originals via helper-column formulas and confirms each step. Works in Claude for Excel; local files need Python.
- [Nushell](https://hebbmind.com/ru/cli/nushell.md): [CLI] Cross-platform shell built around structured data: pipelines pass tables instead of plain text, and you can open and query JSON, CSV, TOML and more directly. Default builds include nu --mcp, which serves it to agents as an MCP server.
- [Marker](https://hebbmind.com/ru/cli/marker.md): [CLI] Converts PDFs, images, PPTX, DOCX, XLSX, EPUB and more into Markdown, JSON or HTML, preserving tables, formulas and layout, with optional LLM help for higher accuracy. Needs Python 3.10+ and PyTorch; large-scale commercial use of the model weights needs a paid license.
- [PostHog MCP](https://hebbmind.com/ru/mcp/posthog-mcp.md): [MCP] PostHog's official hosted MCP: lets agents query product analytics with HogQL, manage feature flags and A/B experiments, and investigate errors and session replays. Sign in to PostHog to authorize; tool calls are free, though a few LLM-powered tools count toward AI usage.
- [Lightpanda Browser](https://hebbmind.com/ru/cli/browser.md): [CLI] Headless browser written from scratch in Zig for AI agents and automation, using less memory and running faster than headless Chrome in official benchmarks. fetch turns pages into Markdown, and it can serve CDP or MCP. Telemetry is on by default (an env var disables it); Windows needs WSL.
- [Agent TARS CLI](https://hebbmind.com/ru/cli/ui-tars-desktop.md): [CLI] ByteDance's open-source multimodal agent CLI: operates browsers via vision or the DOM and calls terminal, file and MCP tools to complete tasks, with a Web UI and headless server mode. Needs Node.js 22+ and a model API key.
- [@agent-infra/mcp-server-browser](https://hebbmind.com/ru/mcp/browser.md): [MCP] Browser automation MCP server open-sourced by ByteDance in the UI-TARS-desktop repo: drives pages through Puppeteer accessibility data with an optional vision mode, running locally over stdio or remotely over SSE or Streamable HTTP.
- [llmfit](https://hebbmind.com/ru/cli/llmfit.md): [CLI] Detects your CPU, memory and GPU and scores open models on whether they run, speed, quality and context, then works with local runtimes like Ollama, llama.cpp and MLX to download and benchmark them. recommend --json gives agent-friendly output.
- [PDFMathTranslate](https://hebbmind.com/ru/cli/pdfmathtranslate.md): [CLI] Translates full PDF papers while preserving formulas, charts and layout (command pdf2zh), outputting monolingual and side-by-side bilingual PDFs. Uses Google Translate by default and can switch to DeepL, OpenAI and others; also runs as an MCP server.
- [Claude Code Router](https://hebbmind.com/ru/cli/claude-code-router.md): [CLI] Local model gateway that routes requests from Claude Code, Codex and other coding agents to providers like DeepSeek, Kimi, Gemini and OpenRouter, with failover, rule-based routing and request logs. Bring your own API keys.
- [skills](https://hebbmind.com/ru/cli/skills.md): [CLI] Package manager for the open Agent Skills ecosystem: one command installs skills from GitHub and other sources into Claude Code, Codex, Cursor and dozens more agents, with search, update and removal. From Vercel Labs.
- [Find Skills](https://hebbmind.com/ru/skill/find-skills.md): [Skill] When a user asks whether a skill exists for some task, searches the skills.sh ecosystem with the skills CLI, then recommends and installs a fit. Maintained by Vercel Labs and shipped in the skills CLI repo.
- [Vibe-Trading](https://hebbmind.com/ru/mcp/vibe-trading.md): [MCP] Trading research agent from HKU's HKUDS whose MCP server offers 70+ tools for quotes, financials, backtesting and research across A-shares, Hong Kong and US stocks and crypto. Needs local Python; HK, US and crypto research need no API key. For research only; not investment advice.
- [book-to-skill](https://hebbmind.com/ru/skill/book-to-skill.md): [Skill] Distills technical books, doc folders or paper collections (PDF, EPUB, DOCX, Markdown and more) into an agent skill with a core framework, on-demand chapter files, glossary and cheat sheet for lookup while working. Extraction needs local Python; poppler or docling optional for PDFs.
- [WeKnora CLI](https://hebbmind.com/ru/cli/tencent-cli.md): [CLI] Official CLI for Tencent's open-source knowledge base platform WeKnora: upload documents, manage knowledge bases, run hybrid search and answer questions from them, or serve as a read-only MCP. Needs your own WeKnora deployment and a source build with Go 1.26+.
- [jq](https://hebbmind.com/ru/cli/jq.md): [CLI] Lightweight command-line JSON processor that slices, filters, maps and transforms JSON with concise expressions and no runtime dependencies. A staple for agents parsing API responses and logs.
- [OCRmyPDF](https://hebbmind.com/ru/cli/ocrmypdf.md): [CLI] Adds a searchable, copyable text layer to scanned PDFs, with automatic deskew, rotation and size optimization, outputting PDF/A by default. Built on Tesseract, supports 100+ languages and runs fully locally.

Next page: https://hebbmind.com/ru/tools.md?page=3&profession=algorithm%2Cdata-engineering%2Cdata%2Cresearch
