# Tools > Every listed resource, editors’ picks first. The filters below can be combined. - Search: append `?q=` to the URL. Separate several keywords with spaces; all of them must match. Matches name, repository, tags, professions, description and README. - Filter by type: append `?type=` to the URL. - Filter by profession: append `?profession=` to the URL. Separate several ids with commas; a resource matches when it suits any of them. Ids are listed at https://hebbmind.com/api/v1/professions - Filter by tag: append `?tag=` to the URL. Separate several tags with commas; a resource must carry all of them. Tags are listed at https://hebbmind.com/api/v1/tags Resources for ML / AI or Data analysis or Security: 362 items. > - ML / AI: Model training, evaluation and LLM application development. > - Data analysis: Querying, statistical analysis, reporting and visualization. > - Security: Code audits, vulnerability triage, penetration testing and compliance. - [garak](https://hebbmind.com/cli/garak.md): [CLI] NVIDIA's open-source LLM vulnerability scanner that probes for prompt injection, jailbreaks, data leakage, hallucination and harmful content, supporting OpenAI, Hugging Face, Bedrock and most REST-accessible models. Scanning cloud models needs their API keys. - [PaperQA2](https://hebbmind.com/cli/paper-qa.md): [CLI] High-accuracy retrieval-augmented Q&A over paper PDFs, text and Office documents, filling in citation metadata, checking retractions and attaching traceable sources to answers. Provides the pqa CLI and a Python library. Needs an LLM API key by default; local models can be configured. - [VisiData](https://hebbmind.com/cli/visidata.md): [CLI] Terminal tool for exploring and wrangling tabular data: opens dozens of formats including CSV, JSON, Excel and SQLite for filtering, sorting, pivots and frequency counts. --batch mode replays actions headlessly or converts file formats. - [Harness](https://hebbmind.com/plugin/harness.md): [Plugin] Say build a harness for this project and it designs a domain-specific agent team, generating subagent definitions, companion skills and orchestration, validates them and keeps evolving them from feedback. Supports workflow orchestration, persistent agent teams and subagent delegation. - [Checkov](https://hebbmind.com/cli/checkov.md): [CLI] Static scanner for security and compliance issues in Terraform, CloudFormation, Kubernetes, Helm, Dockerfiles and CI pipeline configs, with over a thousand built-in policies and hard-coded secret detection. Outputs SARIF, JSON and more. Maintained by Prisma Cloud. - [Scientific Figure Making](https://hebbmind.com/skill/scientific-figure-making.md): [Skill] Publication-quality matplotlib plotting skill from a Yale PhD student: bar charts, trends, heatmaps and multi-panel figures with consistent fonts, colors and export settings, plus real plotting scripts from papers published in venues like Nature Machine Intelligence. Needs Python. - [MLX-Audio](https://hebbmind.com/cli/mlx-audio.md): [CLI] Offline speech toolkit for Apple Silicon Macs: CLI text-to-speech (including Chinese and voice cloning) and speech-to-text, for voicing lessons and explainer videos or transcribing lectures and interviews, with data staying local. Needs an M-series Mac and Python 3.10+; MP3 export needs ffmpeg. - [Steampipe](https://hebbmind.com/cli/steampipe.md): [CLI] Query cloud resources and SaaS APIs live with SQL: plugins map AWS, Azure, GCP, GitHub, Kubernetes and other services to tables you can select from directly, no ETL needed. A single binary with Postgres built in. - [stable-diffusion.cpp](https://hebbmind.com/cli/stable-diffusion-cpp.md): [CLI] Diffusion model inference in pure C/C++: one sd-cli command runs SD, FLUX, Qwen Image, Wan and more locally to create or edit images and short videos, with Metal acceleration on Mac. No cloud needed; bring your own model weights and use a release binary or build from source. - [Supply Chain Risk Auditor](https://hebbmind.com/skill/supply-chain-risk-auditor.md): [Skill] Trail of Bits skill that audits npm, PyPI and Go supply-chain risk: known advisories across direct deps and the whole lockfile tree, deprecated or archived upstreams, npm publisher concentration and install-time scripts. Needs uv; a logged-in gh is recommended. - [Research Paper Writing Skills](https://hebbmind.com/skill/research-paper-writing-skills.md): [Skill] Turns Peng Sida's public research-writing notes into a skill: revises abstracts, introductions, methods and experiments of ML/CV/NLP papers from a reviewer's view, checks that each claim has experimental evidence, and runs a pre-submission self-check. Pure methodology, no API key. - [Differential Review](https://hebbmind.com/skill/differential-review.md): [Skill] From Trail of Bits: reviews PRs, commits or diffs from a security angle, tracing history with git blame, estimating blast radius by caller count and checking test coverage gaps, then writes a Markdown review report. - [Agentic Actions Auditor](https://hebbmind.com/skill/agentic-actions-auditor.md): [Skill] Trail of Bits skill that audits GitHub Actions workflows wired to AI coding agents (Claude Code Action, Codex, Gemini CLI and others) for prompt injection, env-variable relays, dangerous sandbox settings, wildcard allowlists and other privilege risks. - [Trail of Bits Skills](https://hebbmind.com/plugin/trailofbits-skills.md): [Plugin] Plugin marketplace from security firm Trail of Bits with 40+ plugins for code auditing, CodeQL/Semgrep static analysis, variant analysis, supply-chain risk, smart contract security and reverse engineering. Codex can load it directly too. - [Static Analysis](https://hebbmind.com/skill/static-analysis.md): [Skill] Trail of Bits static analysis skills: CodeQL for interprocedural taint tracking and data-flow analysis, Semgrep for rule-based scanning, plus parsing and deduplicating SARIF results. Requires CodeQL or Semgrep installed locally. - [Variant Analysis](https://hebbmind.com/skill/variant-analysis.md): [Skill] From Trail of Bits: starts from one confirmed vulnerability, distills its root cause, then writes and progressively generalizes CodeQL/Semgrep queries to find similar variants across the codebase and report them by severity. - [Defending Code Reference Harness](https://hebbmind.com/skill/defending-code-reference-harness.md): [Skill] Anthropic's reference implementation for finding and fixing vulnerabilities: Claude Code skills for threat modeling, static scanning, triage and patching, plus an autonomous recon-to-patch pipeline (C/C++ memory bugs by default; needs Docker and gVisor). No longer maintained. - [OpenCompass](https://hebbmind.com/cli/opencompass.md): [CLI] Open-source LLM evaluation platform: one opencompass command picks the model and datasets and runs the evaluation across hundreds of benchmarks. Works with local Hugging Face models and API models, with vLLM and LMDeploy for faster inference. - [Build Web Data Visualization](https://hebbmind.com/plugin/build-web-data-visualization.md): [Plugin] OpenAI's official Codex plugin with 18 skills to choose, design, build, test and export web charts, maps, dashboards, Gantt charts and UML, using D3, Vega-Lite and Three.js with attention to accessibility and responsiveness. Codex only. - [Life Science Research](https://hebbmind.com/skill/openai-skills-5.md): [Skill] OpenAI's official life-science skills: 49 skills query public databases such as UniProt, ClinVar, gnomAD and AlphaFold through Python scripts, with a router skill that breaks down questions, normalizes entities and compiles sourced evidence. Written mainly for Codex. - [Data Analytics](https://hebbmind.com/skill/openai-skills.md): [Skill] OpenAI's official data analytics skills: data quality assessment, KPI design, metric anomaly diagnosis, dashboards and analysis reports, market sizing and notebooks. Ships with a Codex plugin; some skills depend on its runtime. - [Life Science Research](https://hebbmind.com/plugin/life-science-research.md): [Plugin] OpenAI's official Codex plugin with about 50 skills that route questions to genetics, omics, pathway, protein structure, chemistry and clinical evidence sources, can split the work across parallel subagents, and synthesize sourced conclusions. - [Jupyter Notebooks](https://hebbmind.com/skill/jupyter-notebook.md): [Skill] Creates, edits and validates reproducible Python and SQL Jupyter notebooks: organizes cells as reports or tutorials, checks conclusions against actual output and reruns top to bottom before handoff. Maintained by OpenAI in the Data Analytics plugin of openai/plugins. - [Data Analytics](https://hebbmind.com/plugin/data-analytics.md): [Plugin] OpenAI's official Codex plugin for answering product and business questions with data: metric anomaly diagnosis, KPI design, market sizing, dashboards and reports, notebooks and data quality checks. Connects to data warehouses and BI tools. - [Build Web Data Visualization](https://hebbmind.com/skill/openai-openai-skills.md): [Skill] OpenAI's official set of 18 web data visualization skills: chart selection and critique, D3, Canvas, Three.js, maps, statistical uncertainty, live dashboards, Gantt charts, UML and scrollytelling. Ships with a Codex plugin; installed alone, the plugin-level references are missing. - [Life Sciences NGS Analysis](https://hebbmind.com/plugin/ngs-analysis.md): [Plugin] OpenAI's official Codex plugin that guides sequencing analysis from BCL/FASTQ: QC, RNA-seq differential expression, single-cell, variant calling and metagenomics, favoring nf-core and other public pipelines with reproducible run logs. Checks for local tools first. Research use only. - [OpenAI Developers](https://hebbmind.com/plugin/openai-developers.md): [Plugin] Build with OpenAI best practices inside Codex: call the OpenAI API, build and deploy agents with the Agents SDK, create ChatGPT apps and prepare submission materials, and create API keys directly. Maintained by OpenAI; Codex only. - [Codex Security](https://hebbmind.com/plugin/codex-security.md): [Plugin] Security scans for a whole repo or for changes like PRs and commits, with threat modeling, vulnerability triage, fixes and re-verification; reports export to JSON, SARIF and more. OpenAI's official Codex plugin; requires Codex Security access. - [Jupytext](https://hebbmind.com/cli/jupytext.md): [CLI] Converts and two-way syncs Jupyter notebooks with plain Python scripts or Markdown, so agents can edit research and teaching notebooks like ordinary text and diffs stay readable. Needs a local Python environment; install with pip. - [arxiv-latex-cleaner](https://hebbmind.com/cli/arxiv-latex-cleaner.md): [CLI] Cleans a LaTeX project before arXiv submission: removes comments, auxiliary files and unused .tex files and images, and can compress images, so internal notes are not published with the source. From Google Research; installable with Homebrew on macOS. - [Trafilatura](https://hebbmind.com/cli/trafilatura.md): [CLI] Python library and CLI for extracting main web content: fetches pages, crawls via sitemaps and RSS feeds, strips headers, footers and other noise, and outputs TXT, Markdown, JSON, XML and more with metadata. Also processes downloaded HTML offline. - [zizmor](https://hebbmind.com/cli/zizmor.md): [CLI] Static security analysis for CI/CD config: finds template injection, credential leaks, excessive permissions and more in GitHub Actions workflows, also covers Dependabot and pre-commit configs, and auto-fixes some findings. - [csvkit](https://hebbmind.com/cli/csvkit.md): [CLI] Veteran suite of CSV command-line tools: in2csv converts Excel and JSON to CSV, csvcut, csvgrep and csvsort filter and sort, csvstat computes statistics, and csvsql runs SQL directly against CSV files. - [Lieflat Charts](https://hebbmind.com/skill/lieflat-charts.md): [Skill] Generates template-driven charts as single-file HTML: picks a chart from real Lupi, Basics, Glance, Maps and Interactive gallery implementations based on data shape, or fills one of 12 Chinese and English report templates. Defaults to Mono grayscale with semantic color presets. Written in Chinese. - [Google Agents CLI Skills](https://hebbmind.com/skill/google-skills.md): [Skill] Google's official skills for building ADK agents: dev workflow, scaffolding, the ADK Python API, evaluation with LLM judges and adaptive rubrics, deployment to Agent Runtime, Cloud Run or GKE, publishing and observability. Works with agents-cli; local dev needs only an AI Studio key. - [Quarto](https://hebbmind.com/cli/quarto-cli.md): [CLI] Posit's open-source scientific and technical publishing system built on Pandoc: embed Python, R or Julia code in Markdown or Jupyter notebooks, then quarto render produces HTML, PDF, Word, slides, websites and books. - [Claude Scholar](https://hebbmind.com/skill/claude-scholar.md): [Skill] Semi-automated research workflow for computer science and AI researchers: ideation, Zotero literature management, experiment analysis and reports, paper writing and polishing, and rebuttals, with optional Obsidian knowledge base. 40+ skills; also installable as a Claude Code plugin. - [Claude Scholar](https://hebbmind.com/plugin/claude-scholar.md): [Plugin] Semi-automated research assistant for CS and AI researchers that links ideation, Zotero literature management, experiment analysis and reporting, paper writing and reviewer responses, and keeps project knowledge in Obsidian. Branches for Codex and other agents exist. - [Ghidra MCP Server](https://hebbmind.com/mcp/ghidra-mcp.md): [MCP] 250+ MCP tools for Ghidra: decompilation, cross-references, data-flow analysis, bulk renaming and commenting, P-code emulation and live debugging, with headless mode support. Requires Java 21 and Ghidra 12.1, and the plugin must be built and deployed first. - [Anthropic Sandbox Runtime (srt)](https://hebbmind.com/cli/sandbox-runtime.md): [CLI] Anthropic's official OS-level sandbox CLI: restricts file and network access for agents, MCP servers and any command without containers, using sandbox-exec on macOS and bubblewrap on Linux. Currently a research preview. - [Finance Toolkit MCP](https://hebbmind.com/mcp/financetoolkit.md): [MCP] From the FinanceToolkit author: computes ratios, valuation, risk and macro indicators with 500+ transparent formulas, for company comparisons and first-pass due diligence. Hosted, no install; enter a Financial Modeling Prep key on first connect (free tier: US stocks, 5 years). Verify results. - [LM Studio CLI (lms)](https://hebbmind.com/cli/lms.md): [CLI] LM Studio's official CLI: list, load and unload local models, start and stop the local API server, and check status and logs; ls, ps and other commands support --json output for scripts and agents. Requires the LM Studio desktop app. - [PySceneDetect](https://hebbmind.com/cli/pyscenedetect.md): [CLI] Detects shot changes in video and splits long footage into scenes, exporting cut lists and per-scene thumbnails, useful for shot analysis, organizing footage and finding edit points. Runs locally; needs Python 3.10+, plus FFmpeg or mkvmerge for splitting. - [ExifTool](https://hebbmind.com/cli/exiftool.md): [CLI] Classic CLI for reading and writing metadata in hundreds of file types including images, video, audio and PDF, covering EXIF, GPS, IPTC, XMP and camera makers' proprietary tags, with batch editing, stripping and conversion. Requires Perl. - [MCPorter](https://hebbmind.com/cli/mcporter.md): [CLI] CLI and TypeScript runtime for discovering and calling MCP servers from the terminal and scripts: list tool signatures and call tools directly, or generate a standalone CLI or typed client from a server. Auto-imports existing MCP configs from Claude Code, Codex and others. - [YouPlot](https://hebbmind.com/cli/youplot.md): [CLI] Draws bar charts, histograms, line charts, scatter plots and box plots in the terminal from CSV/TSV on stdin, so you can glance at data distributions at the end of a shell pipeline. The command is uplot. - [Auto-Empirical Research Skills (AERS)](https://hebbmind.com/skill/auto-empirical-research-skills.md): [Skill] Empirical social science skills from Stanford REAP and CoPaper.AI, bundling 77 in-house and third-party collections: topic selection, literature reviews, DID/RD/IV identification, regression tables in Python, Stata or R, robustness audits and paper writing. Stata flows need Stata installed. - [AntV MCP Server Chart](https://hebbmind.com/mcp/mcp-server-chart.md): [MCP] Generates 26+ chart types with AntV, including line, bar, Sankey, word cloud, mind map and pivot table, returning image links. Officially maintained by Ant Group's AntV team; uses a public rendering service by default and can be self-hosted. - [Gemini API Dev](https://hebbmind.com/skill/gemini-api-dev.md): [Skill] Teaches agents to code against the latest Gemini API and Python/TypeScript SDKs: multi-turn chat, function calling, structured output, and image and speech generation, while avoiding deprecated older models. Maintained by Google's Gemini team. - [Gemini Skills](https://hebbmind.com/skill/gemini-skills.md): [Skill] Gemini API development skills: gemini-api-dev (core API and SDKs), gemini-live-api-dev (real-time bidirectional audio/video streaming) and gemini-omni-flash-api (Omni video generation and editing), filling in APIs released after model training cutoffs. Maintained by Google's Gemini team. Next page: https://hebbmind.com/tools.md?page=5&profession=algorithm%2Cdata%2Csecurity