# Tools

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Resources for ML / AI or Data analysis or Security or Customer support: 423 items.

> - ML / AI: Model training, evaluation and LLM application development.
> - Data analysis: Querying, statistical analysis, reporting and visualization.
> - Security: Code audits, vulnerability triage, penetration testing and compliance.
> - Customer support: Tickets, customer questions, knowledge-base upkeep and service quality.

- [LLM](https://hebbmind.com/cli/llm.md): [CLI] Simon Willison's LLM CLI and Python library: call OpenAI, Claude, Gemini and local models from the terminal, with conversations logged to SQLite automatically, plus embeddings, structured extraction, tool calling and a plugin system.
- [Trae Agent](https://hebbmind.com/cli/trae-agent.md): [CLI] ByteDance's open-source, general software engineering agent: trae-cli edits files and runs commands from natural language, supports multiple model providers and MCP, and records full execution trajectories. Transparent design suits agent research and customization. Needs your own model API key.
- [mycli](https://hebbmind.com/cli/mycli.md): [CLI] MySQL terminal client with smart autocompletion and syntax highlighting, also compatible with MariaDB and TiDB. Supports --execute and batch mode with CSV or table output, so agents can run SQL directly.
- [Arize Phoenix MCP Server](https://hebbmind.com/mcp/phoenix-mcp.md): [MCP] Connects to the Arize Phoenix observability platform so agents can query LLM traces and sessions, manage prompts, browse datasets and read experiment evaluation results. Maintained by Arize; needs a self-hosted or cloud Phoenix instance.
- [Datasette](https://hebbmind.com/cli/datasette.md): [CLI] Publishes SQLite databases as browsable, queryable web pages and JSON APIs, with SQL queries, metadata and plugins, and deploys to Cloud Run and other platforms with datasette publish. Great for data exploration and data journalism. Needs Python 3.10+.
- [Presidio CLI](https://hebbmind.com/cli/presidio.md): [CLI] Scans files and directories for personal data such as names, emails and credit card numbers using Presidio Analyzer, with configurable entity types, confidence thresholds and ignore rules. Needs Python 3.10+ and a spaCy language model.
- [OSV-Scanner](https://hebbmind.com/cli/osv-scanner.md): [CLI] Google's official dependency vulnerability scanner: parses project lockfiles and container images, checks them against the OSV.dev database to find affected dependencies, and can suggest upgrade fixes (experimental).
- [Hugging Face Skills](https://hebbmind.com/plugin/huggingface-skills.md): [Plugin] Lets agents work with the Hugging Face Hub through the hf CLI: search and download models and datasets, manage repos and Spaces, and run training and evaluation jobs on cloud GPUs, with more workflow skills installable as needed. Maintained by Hugging Face.
- [Hugging Face LLM Trainer](https://hebbmind.com/skill/huggingface-llm-trainer.md): [Skill] Lets agents fine-tune language and vision models with TRL or Unsloth on Hugging Face Jobs cloud GPUs, supporting SFT, DPO, GRPO and reward models, and convert results to GGUF for local use. Requires an HF Pro or higher paid plan. Maintained by Hugging Face.
- [Hugging Face Skills](https://hebbmind.com/skill/huggingface-skills.md): [Skill] Hugging Face's official skills: manage Hub models and datasets with the hf CLI, fine-tune language and vision models, run model evaluations, and build Gradio apps deployed to Spaces. Needs an HF account; cloud training on HF Jobs requires a paid plan.
- [Hugging Face CLI (hf-cli)](https://hebbmind.com/skill/hf-cli.md): [Skill] Teaches agents the Hugging Face Hub CLI hf: search and download models, manage datasets, Spaces, Buckets and repos, and run Jobs and inference endpoints. The skill content is generated from your local CLI, so install hf first. Maintained by Hugging Face.
- [Codex Security](https://hebbmind.com/cli/codex-security.md): [CLI] OpenAI's official security CLI and TypeScript SDK: scans codebases to find, validate and fix security vulnerabilities, and can draft a SECURITY.md policy. Needs Node.js 22.13+, Python 3.10+, and a ChatGPT sign-in or API key.
- [MCP Inspector](https://hebbmind.com/cli/inspector.md): [CLI] The official MCP debugging tool: connect to any MCP server through a web UI, CLI or terminal UI to list and call its tools, resources and prompts. CLI mode outputs JSON, suited to scripts and CI smoke tests.
- [pdfplumber](https://hebbmind.com/cli/pdfplumber.md): [CLI] Reads the exact position of every character, line and table cell in digital PDFs: the CLI exports layout-preserving text or CSV/JSON details, and the Python API extracts tables and form fields, ideal for invoices, statements and reports. Runs locally with Python; scans need OCR first.
- [usql](https://hebbmind.com/cli/usql.md): [CLI] Universal psql-style SQL command line: one tool to connect to PostgreSQL, MySQL, SQLite, SQL Server, Oracle and dozens of other SQL and NoSQL databases, with support for copying data between databases.
- [Miller](https://hebbmind.com/cli/miller.md): [CLI] Processes CSV, TSV, JSON and other structured data like awk, sed, cut, join and sort, but by field name, for cleaning, aggregation, format conversion and pretty-printing. The command is mlr; written in Go with no runtime dependencies.
- [Feynman](https://hebbmind.com/cli/feynman.md): [CLI] Open-source research agent: one command runs literature reviews, deep research, paper reviews, paper-code consistency checks and replication plans, searching arXiv, PubMed and more with sources recorded. Good for grad students writing reviews. Run feynman setup to sign in to a model provider.
- [SQLFluff](https://hebbmind.com/cli/sqlfluff.md): [CLI] Linter and formatter for 20+ SQL dialects that auto-fixes most issues and handles Jinja templating and dbt projects (dbt needs a plugin), suited to warehouse code review and CI.
- [Privacy Legal](https://hebbmind.com/plugin/privacy-legal.md): [Plugin] Privacy compliance plugin: decides whether processing activities need a PIA or DPIA, generates privacy impact assessments, reviews DPAs from the controller or processor side, and drafts DSAR responses within statutory deadlines. Official from Anthropic.
- [AI Governance Legal](https://hebbmind.com/plugin/ai-governance-legal.md): [Plugin] Anthropic's official AI governance plugin: tiers AI use cases against your internal register, runs impact assessments across applicable laws such as the EU AI Act, reviews vendor AI terms for training-data and liability risk, and periodically checks for drift between AI policy and practice.
- [garak](https://hebbmind.com/cli/garak.md): [CLI] NVIDIA's open-source LLM vulnerability scanner that probes for prompt injection, jailbreaks, data leakage, hallucination and harmful content, supporting OpenAI, Hugging Face, Bedrock and most REST-accessible models. Scanning cloud models needs their API keys.
- [PaperQA2](https://hebbmind.com/cli/paper-qa.md): [CLI] High-accuracy retrieval-augmented Q&A over paper PDFs, text and Office documents, filling in citation metadata, checking retractions and attaching traceable sources to answers. Provides the pqa CLI and a Python library. Needs an LLM API key by default; local models can be configured.
- [VisiData](https://hebbmind.com/cli/visidata.md): [CLI] Terminal tool for exploring and wrangling tabular data: opens dozens of formats including CSV, JSON, Excel and SQLite for filtering, sorting, pivots and frequency counts. --batch mode replays actions headlessly or converts file formats.
- [Harness](https://hebbmind.com/plugin/harness.md): [Plugin] Say build a harness for this project and it designs a domain-specific agent team, generating subagent definitions, companion skills and orchestration, validates them and keeps evolving them from feedback. Supports workflow orchestration, persistent agent teams and subagent delegation.
- [Checkov](https://hebbmind.com/cli/checkov.md): [CLI] Static scanner for security and compliance issues in Terraform, CloudFormation, Kubernetes, Helm, Dockerfiles and CI pipeline configs, with over a thousand built-in policies and hard-coded secret detection. Outputs SARIF, JSON and more. Maintained by Prisma Cloud.
- [Scientific Figure Making](https://hebbmind.com/skill/scientific-figure-making.md): [Skill] Publication-quality matplotlib plotting skill from a Yale PhD student: bar charts, trends, heatmaps and multi-panel figures with consistent fonts, colors and export settings, plus real plotting scripts from papers published in venues like Nature Machine Intelligence. Needs Python.
- [MLX-Audio](https://hebbmind.com/cli/mlx-audio.md): [CLI] Offline speech toolkit for Apple Silicon Macs: CLI text-to-speech (including Chinese and voice cloning) and speech-to-text, for voicing lessons and explainer videos or transcribing lectures and interviews, with data staying local. Needs an M-series Mac and Python 3.10+; MP3 export needs ffmpeg.
- [Steampipe](https://hebbmind.com/cli/steampipe.md): [CLI] Query cloud resources and SaaS APIs live with SQL: plugins map AWS, Azure, GCP, GitHub, Kubernetes and other services to tables you can select from directly, no ETL needed. A single binary with Postgres built in.
- [stable-diffusion.cpp](https://hebbmind.com/cli/stable-diffusion-cpp.md): [CLI] Diffusion model inference in pure C/C++: one sd-cli command runs SD, FLUX, Qwen Image, Wan and more locally to create or edit images and short videos, with Metal acceleration on Mac. No cloud needed; bring your own model weights and use a release binary or build from source.
- [Supply Chain Risk Auditor](https://hebbmind.com/skill/supply-chain-risk-auditor.md): [Skill] Trail of Bits skill that audits npm, PyPI and Go supply-chain risk: known advisories across direct deps and the whole lockfile tree, deprecated or archived upstreams, npm publisher concentration and install-time scripts. Needs uv; a logged-in gh is recommended.
- [Trail of Bits Skills](https://hebbmind.com/plugin/trailofbits-skills.md): [Plugin] Plugin marketplace from security firm Trail of Bits with 40+ plugins for code auditing, CodeQL/Semgrep static analysis, variant analysis, supply-chain risk, smart contract security and reverse engineering. Codex can load it directly too.
- [Research Paper Writing Skills](https://hebbmind.com/skill/research-paper-writing-skills.md): [Skill] Turns Peng Sida's public research-writing notes into a skill: revises abstracts, introductions, methods and experiments of ML/CV/NLP papers from a reviewer's view, checks that each claim has experimental evidence, and runs a pre-submission self-check. Pure methodology, no API key.
- [Agentic Actions Auditor](https://hebbmind.com/skill/agentic-actions-auditor.md): [Skill] Trail of Bits skill that audits GitHub Actions workflows wired to AI coding agents (Claude Code Action, Codex, Gemini CLI and others) for prompt injection, env-variable relays, dangerous sandbox settings, wildcard allowlists and other privilege risks.
- [Static Analysis](https://hebbmind.com/skill/static-analysis.md): [Skill] Trail of Bits static analysis skills: CodeQL for interprocedural taint tracking and data-flow analysis, Semgrep for rule-based scanning, plus parsing and deduplicating SARIF results. Requires CodeQL or Semgrep installed locally.
- [Variant Analysis](https://hebbmind.com/skill/variant-analysis.md): [Skill] From Trail of Bits: starts from one confirmed vulnerability, distills its root cause, then writes and progressively generalizes CodeQL/Semgrep queries to find similar variants across the codebase and report them by severity.
- [Differential Review](https://hebbmind.com/skill/differential-review.md): [Skill] From Trail of Bits: reviews PRs, commits or diffs from a security angle, tracing history with git blame, estimating blast radius by caller count and checking test coverage gaps, then writes a Markdown review report.
- [Defending Code Reference Harness](https://hebbmind.com/skill/defending-code-reference-harness.md): [Skill] Anthropic's reference implementation for finding and fixing vulnerabilities: Claude Code skills for threat modeling, static scanning, triage and patching, plus an autonomous recon-to-patch pipeline (C/C++ memory bugs by default; needs Docker and gVisor). No longer maintained.
- [OpenAI Developers](https://hebbmind.com/plugin/openai-developers.md): [Plugin] Build with OpenAI best practices inside Codex: call the OpenAI API, build and deploy agents with the Agents SDK, create ChatGPT apps and prepare submission materials, and create API keys directly. Maintained by OpenAI; Codex only.
- [Outlook Email](https://hebbmind.com/plugin/outlook-email.md): [Plugin] OpenAI's official Codex plugin for Outlook mail: triages your inbox, summarizes threads, extracts action items, and drafts replies or forwards, for people who handle heavy email loads. Requires Codex with a ChatGPT sign-in and an authorized Microsoft account.
- [Data Analytics](https://hebbmind.com/plugin/data-analytics.md): [Plugin] OpenAI's official Codex plugin for answering product and business questions with data: metric anomaly diagnosis, KPI design, market sizing, dashboards and reports, notebooks and data quality checks. Connects to data warehouses and BI tools.
- [Notion Knowledge Capture](https://hebbmind.com/skill/notion-knowledge-capture.md): [Skill] Turns conversations and notes into structured Notion pages such as team wikis, how-to guides, decision records and FAQs, linked to related pages. From OpenAI's official plugin repo (developer: Notion); needs the Notion MCP.
- [Build Web Data Visualization](https://hebbmind.com/skill/openai-openai-skills.md): [Skill] OpenAI's official set of 18 web data visualization skills: chart selection and critique, D3, Canvas, Three.js, maps, statistical uncertainty, live dashboards, Gantt charts, UML and scrollytelling. Ships with a Codex plugin; installed alone, the plugin-level references are missing.
- [Build Web Data Visualization](https://hebbmind.com/plugin/build-web-data-visualization.md): [Plugin] OpenAI's official Codex plugin with 18 skills to choose, design, build, test and export web charts, maps, dashboards, Gantt charts and UML, using D3, Vega-Lite and Three.js with attention to accessibility and responsiveness. Codex only.
- [Codex Security](https://hebbmind.com/plugin/codex-security.md): [Plugin] Security scans for a whole repo or for changes like PRs and commits, with threat modeling, vulnerability triage, fixes and re-verification; reports export to JSON, SARIF and more. OpenAI's official Codex plugin; requires Codex Security access.
- [Data Analytics](https://hebbmind.com/skill/openai-skills.md): [Skill] OpenAI's official data analytics skills: data quality assessment, KPI design, metric anomaly diagnosis, dashboards and analysis reports, market sizing and notebooks. Ships with a Codex plugin; some skills depend on its runtime.
- [Jupyter Notebooks](https://hebbmind.com/skill/jupyter-notebook.md): [Skill] Creates, edits and validates reproducible Python and SQL Jupyter notebooks: organizes cells as reports or tutorials, checks conclusions against actual output and reruns top to bottom before handoff. Maintained by OpenAI in the Data Analytics plugin of openai/plugins.
- [Life Sciences NGS Analysis](https://hebbmind.com/plugin/ngs-analysis.md): [Plugin] OpenAI's official Codex plugin that guides sequencing analysis from BCL/FASTQ: QC, RNA-seq differential expression, single-cell, variant calling and metagenomics, favoring nf-core and other public pipelines with reproducible run logs. Checks for local tools first. Research use only.
- [Gmail](https://hebbmind.com/plugin/gmail.md): [Plugin] OpenAI's official Codex plugin that uses the Gmail connector to search mail, read threads, draft replies and tidy your inbox. The plugin bundles no extra skills; authorize your Google account in Codex.
- [Life Science Research](https://hebbmind.com/plugin/life-science-research.md): [Plugin] OpenAI's official Codex plugin with about 50 skills that route questions to genetics, omics, pathway, protein structure, chemistry and clinical evidence sources, can split the work across parallel subagents, and synthesize sourced conclusions.
- [Life Science Research](https://hebbmind.com/skill/openai-skills-5.md): [Skill] OpenAI's official life-science skills: 49 skills query public databases such as UniProt, ClinVar, gnomAD and AlphaFold through Python scripts, with a router skill that breaks down questions, normalizes entities and compiles sourced evidence. Written mainly for Codex.

Next page: https://hebbmind.com/tools.md?page=5&profession=algorithm%2Cdata%2Csecurity%2Csupport
