# Tools

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Resources for ML / AI or Data engineering or Data analysis or Security or Customer support: 441 items.

> - ML / AI: Model training, evaluation and LLM application development.
> - Data engineering: Data pipelines, warehouse modeling, ETL and data quality.
> - Data analysis: Querying, statistical analysis, reporting and visualization.
> - Security: Code audits, vulnerability triage, penetration testing and compliance.
> - Customer support: Tickets, customer questions, knowledge-base upkeep and service quality.

- [Life Sciences NGS Analysis](https://hebbmind.com/plugin/ngs-analysis.md): [Plugin] OpenAI's official Codex plugin that guides sequencing analysis from BCL/FASTQ: QC, RNA-seq differential expression, single-cell, variant calling and metagenomics, favoring nf-core and other public pipelines with reproducible run logs. Checks for local tools first. Research use only.
- [Gmail](https://hebbmind.com/plugin/gmail.md): [Plugin] OpenAI's official Codex plugin that uses the Gmail connector to search mail, read threads, draft replies and tidy your inbox. The plugin bundles no extra skills; authorize your Google account in Codex.
- [Life Science Research](https://hebbmind.com/plugin/life-science-research.md): [Plugin] OpenAI's official Codex plugin with about 50 skills that route questions to genetics, omics, pathway, protein structure, chemistry and clinical evidence sources, can split the work across parallel subagents, and synthesize sourced conclusions.
- [OpenAI Developers](https://hebbmind.com/plugin/openai-developers.md): [Plugin] Build with OpenAI best practices inside Codex: call the OpenAI API, build and deploy agents with the Agents SDK, create ChatGPT apps and prepare submission materials, and create API keys directly. Maintained by OpenAI; Codex only.
- [Life Science Research](https://hebbmind.com/skill/openai-skills-5.md): [Skill] OpenAI's official life-science skills: 49 skills query public databases such as UniProt, ClinVar, gnomAD and AlphaFold through Python scripts, with a router skill that breaks down questions, normalizes entities and compiles sourced evidence. Written mainly for Codex.
- [Outlook Email](https://hebbmind.com/plugin/outlook-email.md): [Plugin] OpenAI's official Codex plugin for Outlook mail: triages your inbox, summarizes threads, extracts action items, and drafts replies or forwards, for people who handle heavy email loads. Requires Codex with a ChatGPT sign-in and an authorized Microsoft account.
- [Build Web Data Visualization](https://hebbmind.com/plugin/build-web-data-visualization.md): [Plugin] OpenAI's official Codex plugin with 18 skills to choose, design, build, test and export web charts, maps, dashboards, Gantt charts and UML, using D3, Vega-Lite and Three.js with attention to accessibility and responsiveness. Codex only.
- [Build Web Data Visualization](https://hebbmind.com/skill/openai-openai-skills.md): [Skill] OpenAI's official set of 18 web data visualization skills: chart selection and critique, D3, Canvas, Three.js, maps, statistical uncertainty, live dashboards, Gantt charts, UML and scrollytelling. Ships with a Codex plugin; installed alone, the plugin-level references are missing.
- [Data Analytics](https://hebbmind.com/plugin/data-analytics.md): [Plugin] OpenAI's official Codex plugin for answering product and business questions with data: metric anomaly diagnosis, KPI design, market sizing, dashboards and reports, notebooks and data quality checks. Connects to data warehouses and BI tools.
- [Notion Knowledge Capture](https://hebbmind.com/skill/notion-knowledge-capture.md): [Skill] Turns conversations and notes into structured Notion pages such as team wikis, how-to guides, decision records and FAQs, linked to related pages. From OpenAI's official plugin repo (developer: Notion); needs the Notion MCP.
- [Codex Security](https://hebbmind.com/plugin/codex-security.md): [Plugin] Security scans for a whole repo or for changes like PRs and commits, with threat modeling, vulnerability triage, fixes and re-verification; reports export to JSON, SARIF and more. OpenAI's official Codex plugin; requires Codex Security access.
- [OpenCompass](https://hebbmind.com/cli/opencompass.md): [CLI] Open-source LLM evaluation platform: one opencompass command picks the model and datasets and runs the evaluation across hundreds of benchmarks. Works with local Hugging Face models and API models, with vLLM and LMDeploy for faster inference.
- [Himalaya](https://hebbmind.com/cli/himalaya.md): [CLI] Command-line email client supporting IMAP, SMTP, JMAP, Gmail and Microsoft Graph, with multiple accounts and --json output, so agents can check, search, compose and send mail. A first-run wizard auto-detects your mailbox settings.
- [Jupytext](https://hebbmind.com/cli/jupytext.md): [CLI] Converts and two-way syncs Jupyter notebooks with plain Python scripts or Markdown, so agents can edit research and teaching notebooks like ordinary text and diffs stay readable. Needs a local Python environment; install with pip.
- [arxiv-latex-cleaner](https://hebbmind.com/cli/arxiv-latex-cleaner.md): [CLI] Cleans a LaTeX project before arXiv submission: removes comments, auxiliary files and unused .tex files and images, and can compress images, so internal notes are not published with the source. From Google Research; installable with Homebrew on macOS.
- [Trafilatura](https://hebbmind.com/cli/trafilatura.md): [CLI] Python library and CLI for extracting main web content: fetches pages, crawls via sitemaps and RSS feeds, strips headers, footers and other noise, and outputs TXT, Markdown, JSON, XML and more with metadata. Also processes downloaded HTML offline.
- [zizmor](https://hebbmind.com/cli/zizmor.md): [CLI] Static security analysis for CI/CD config: finds template injection, credential leaks, excessive permissions and more in GitHub Actions workflows, also covers Dependabot and pre-commit configs, and auto-fixes some findings.
- [csvkit](https://hebbmind.com/cli/csvkit.md): [CLI] Veteran suite of CSV command-line tools: in2csv converts Excel and JSON to CSV, csvcut, csvgrep and csvsort filter and sort, csvstat computes statistics, and csvsql runs SQL directly against CSV files.
- [Lieflat Charts](https://hebbmind.com/skill/lieflat-charts.md): [Skill] Generates template-driven charts as single-file HTML: picks a chart from real Lupi, Basics, Glance, Maps and Interactive gallery implementations based on data shape, or fills one of 12 Chinese and English report templates. Defaults to Mono grayscale with semantic color presets. Written in Chinese.
- [Google Agents CLI Skills](https://hebbmind.com/skill/google-skills.md): [Skill] Google's official skills for building ADK agents: dev workflow, scaffolding, the ADK Python API, evaluation with LLM judges and adaptive rubrics, deployment to Agent Runtime, Cloud Run or GKE, publishing and observability. Works with agents-cli; local dev needs only an AI Studio key.
- [Quarto](https://hebbmind.com/cli/quarto-cli.md): [CLI] Posit's open-source scientific and technical publishing system built on Pandoc: embed Python, R or Julia code in Markdown or Jupyter notebooks, then quarto render produces HTML, PDF, Word, slides, websites and books.
- [Claude Scholar](https://hebbmind.com/skill/claude-scholar.md): [Skill] Semi-automated research workflow for computer science and AI researchers: ideation, Zotero literature management, experiment analysis and reports, paper writing and polishing, and rebuttals, with optional Obsidian knowledge base. 40+ skills; also installable as a Claude Code plugin.
- [Claude Scholar](https://hebbmind.com/plugin/claude-scholar.md): [Plugin] Semi-automated research assistant for CS and AI researchers that links ideation, Zotero literature management, experiment analysis and reporting, paper writing and reviewer responses, and keeps project knowledge in Obsidian. Branches for Codex and other agents exist.
- [Ghidra MCP Server](https://hebbmind.com/mcp/ghidra-mcp.md): [MCP] 250+ MCP tools for Ghidra: decompilation, cross-references, data-flow analysis, bulk renaming and commenting, P-code emulation and live debugging, with headless mode support. Requires Java 21 and Ghidra 12.1, and the plugin must be built and deployed first.
- [Anthropic Sandbox Runtime (srt)](https://hebbmind.com/cli/sandbox-runtime.md): [CLI] Anthropic's official OS-level sandbox CLI: restricts file and network access for agents, MCP servers and any command without containers, using sandbox-exec on macOS and bubblewrap on Linux. Currently a research preview.
- [Finance Toolkit MCP](https://hebbmind.com/mcp/financetoolkit.md): [MCP] From the FinanceToolkit author: computes ratios, valuation, risk and macro indicators with 500+ transparent formulas, for company comparisons and first-pass due diligence. Hosted, no install; enter a Financial Modeling Prep key on first connect (free tier: US stocks, 5 years). Verify results.
- [LM Studio CLI (lms)](https://hebbmind.com/cli/lms.md): [CLI] LM Studio's official CLI: list, load and unload local models, start and stop the local API server, and check status and logs; ls, ps and other commands support --json output for scripts and agents. Requires the LM Studio desktop app.
- [PySceneDetect](https://hebbmind.com/cli/pyscenedetect.md): [CLI] Detects shot changes in video and splits long footage into scenes, exporting cut lists and per-scene thumbnails, useful for shot analysis, organizing footage and finding edit points. Runs locally; needs Python 3.10+, plus FFmpeg or mkvmerge for splitting.
- [ExifTool](https://hebbmind.com/cli/exiftool.md): [CLI] Classic CLI for reading and writing metadata in hundreds of file types including images, video, audio and PDF, covering EXIF, GPS, IPTC, XMP and camera makers' proprietary tags, with batch editing, stripping and conversion. Requires Perl.
- [MCPorter](https://hebbmind.com/cli/mcporter.md): [CLI] CLI and TypeScript runtime for discovering and calling MCP servers from the terminal and scripts: list tool signatures and call tools directly, or generate a standalone CLI or typed client from a server. Auto-imports existing MCP configs from Claude Code, Codex and others.
- [YouPlot](https://hebbmind.com/cli/youplot.md): [CLI] Draws bar charts, histograms, line charts, scatter plots and box plots in the terminal from CSV/TSV on stdin, so you can glance at data distributions at the end of a shell pipeline. The command is uplot.
- [Auto-Empirical Research Skills (AERS)](https://hebbmind.com/skill/auto-empirical-research-skills.md): [Skill] Empirical social science skills from Stanford REAP and CoPaper.AI, bundling 77 in-house and third-party collections: topic selection, literature reviews, DID/RD/IV identification, regression tables in Python, Stata or R, robustness audits and paper writing. Stata flows need Stata installed.
- [AntV MCP Server Chart](https://hebbmind.com/mcp/mcp-server-chart.md): [MCP] Generates 26+ chart types with AntV, including line, bar, Sankey, word cloud, mind map and pivot table, returning image links. Officially maintained by Ant Group's AntV team; uses a public rendering service by default and can be self-hosted.
- [Gemini API Dev](https://hebbmind.com/skill/gemini-api-dev.md): [Skill] Teaches agents to code against the latest Gemini API and Python/TypeScript SDKs: multi-turn chat, function calling, structured output, and image and speech generation, while avoiding deprecated older models. Maintained by Google's Gemini team.
- [Gemini Skills](https://hebbmind.com/skill/gemini-skills.md): [Skill] Gemini API development skills: gemini-api-dev (core API and SDKs), gemini-live-api-dev (real-time bidirectional audio/video streaming) and gemini-omni-flash-api (Omni video generation and editing), filling in APIs released after model training cutoffs. Maintained by Google's Gemini team.
- [Excel MCP Server](https://hebbmind.com/mcp/excel-mcp-server.md): [MCP] Create, read and modify xlsx workbooks without Microsoft Excel installed: formulas, formatting and conditional formatting, charts, pivot tables and tables. Runs locally over stdio or as a remote HTTP service.
- [Nali](https://hebbmind.com/cli/nali.md): [CLI] Terminal tool for offline IP geolocation and CDN provider lookup, supporting QQwry, GeoIP2, ip2region and other databases. Pipe output from dig, nslookup and similar commands through it to annotate IPs automatically.
- [NotFair Plugin](https://hebbmind.com/plugin/notfair-plugin.md): [Plugin] Open-source marketing plugin with 48 skills: SEO and AI search optimization (GEO), GA4 and Search Console analysis, ad diagnostics for Google, Meta, X, LinkedIn, Reddit and TikTok, and WordPress upkeep. Some SEO skills need only a URL; live data requires NotFair OAuth and linked accounts.
- [AiPy](https://hebbmind.com/cli/aipyapp.md): [CLI] Knownsec's open-source Python-use agent: describe a task in plain language and it writes and runs Python on your machine, e.g. tidying Excel files, summarizing attendance or screening resumes. Needs Python 3.11+ and a model API key such as DeepSeek; code runs locally, so back up important files.
- [Hugging Face CLI](https://hebbmind.com/cli/huggingface-hub.md): [CLI] Hugging Face's official hf CLI: search, download and upload models and datasets, manage repos and storage buckets, and run jobs on Hugging Face's cloud. Output adapts automatically for agents, and hf skills add installs companion skills. Uploads and similar actions need a login.
- [Camelot](https://hebbmind.com/cli/camelot.md): [CLI] Open-source PDF table extraction with a camelot CLI: exports tables from financial reports, bank statements and statistical reports to Excel, CSV or Markdown, with an accuracy score. Needs Python 3.10+; handles text-based PDFs by default, scans need the ml and ocr extras. Double-check results.
- [qsv](https://hebbmind.com/cli/qsv.md): [CLI] Fast Rust toolkit for tabular data with nearly 80 subcommands for querying, stats, cleaning, validation, joins and format conversion on CSV and Excel. Also offers an MCP server and a Claude Cowork plugin.
- [Browserbase Skills](https://hebbmind.com/skill/browserbase-skills.md): [Skill] Browserbase's official skills: drive a local or cloud browser with the browse CLI for web scraping and search, turning site traffic into an OpenAPI spec, adversarial UI testing and competitor research. Cloud features need a Browserbase account.
- [DBHub](https://hebbmind.com/mcp/dbhub.md): [MCP] One server connecting PostgreSQL, MySQL, MariaDB, SQL Server, Oracle and SQLite, exposing just two tools by default to save context, with read-only mode and SSH tunneling. From Bytebase.
- [NVIDIA Agent Skills](https://hebbmind.com/plugin/nvidia-skills.md): [Plugin] NVIDIA's official plugin that finds and installs the right skills from NVIDIA's catalog for your task, spanning CUDA acceleration, NIM inference, NeMo training, RAG blueprints, Omniverse simulation and robotics. Listed in both the Claude and Codex official marketplaces.
- [NVIDIA Agent Skills](https://hebbmind.com/skill/nvidia-skills.md): [Skill] NVIDIA's official, verified catalog of hundreds of skills covering CUDA-X libraries, NeMo training, NIM and Dynamo inference, RAG blueprints, Jetson, Omniverse and robotics simulation. The install adds only nvidia-skill-finder, which recommends other skills and installs them once you confirm.
- [Google Analytics MCP Server](https://hebbmind.com/mcp/google-analytics-mcp.md): [MCP] Query Google Analytics 4 in natural language: read account and property info and run standard, funnel and realtime reports. Official from Google Analytics (experimental); requires Google Cloud Application Default Credentials.
- [CTF Skills](https://hebbmind.com/skill/ctf-skills.md): [Skill] Skills for solving CTF challenges across web, pwn, crypto, reverse engineering, forensics, OSINT and malware analysis, plus a script that installs common CTF tools in one go. Follows the Agent Skills spec and installs with npx skills.
- [Finance Skills](https://hebbmind.com/plugin/finance-skills.md): [Plugin] Plugin marketplace for investment research: six plugin groups covering yfinance market data, earnings previews and recaps, DCF valuation, option payoff charts, ETF premiums, read-only news from X, Discord and other social sources, and TradingView data. Research only, not investment advice.
- [Postgres MCP Pro](https://hebbmind.com/mcp/postgres-mcp.md): [MCP] PostgreSQL MCP server with database health checks, index tuning, EXPLAIN plan analysis and hypothetical index simulation, plus safe read-only SQL execution in restricted mode.

Next page: https://hebbmind.com/tools.md?page=6&profession=algorithm%2Cdata-engineering%2Cdata%2Csecurity%2Csupport
