# Tools

> Every listed resource, editors’ picks first. The filters below can be combined.

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Resources for DevOps / SRE or ML / AI or Data analysis or Security: 522 items.

> - DevOps / SRE: Deployment, monitoring, cloud resources and reliability.
> - ML / AI: Model training, evaluation and LLM application development.
> - Data analysis: Querying, statistical analysis, reporting and visualization.
> - Security: Code audits, vulnerability triage, penetration testing and compliance.

- [Life Science Research](https://hebbmind.com/skill/openai-skills-5.md): [Skill] OpenAI's official life-science skills: 49 skills query public databases such as UniProt, ClinVar, gnomAD and AlphaFold through Python scripts, with a router skill that breaks down questions, normalizes entities and compiles sourced evidence. Written mainly for Codex.
- [Data Analytics](https://hebbmind.com/skill/openai-skills.md): [Skill] OpenAI's official data analytics skills: data quality assessment, KPI design, metric anomaly diagnosis, dashboards and analysis reports, market sizing and notebooks. Ships with a Codex plugin; some skills depend on its runtime.
- [Life Science Research](https://hebbmind.com/plugin/life-science-research.md): [Plugin] OpenAI's official Codex plugin with about 50 skills that route questions to genetics, omics, pathway, protein structure, chemistry and clinical evidence sources, can split the work across parallel subagents, and synthesize sourced conclusions.
- [Jupyter Notebooks](https://hebbmind.com/skill/jupyter-notebook.md): [Skill] Creates, edits and validates reproducible Python and SQL Jupyter notebooks: organizes cells as reports or tutorials, checks conclusions against actual output and reruns top to bottom before handoff. Maintained by OpenAI in the Data Analytics plugin of openai/plugins.
- [Data Analytics](https://hebbmind.com/plugin/data-analytics.md): [Plugin] OpenAI's official Codex plugin for answering product and business questions with data: metric anomaly diagnosis, KPI design, market sizing, dashboards and reports, notebooks and data quality checks. Connects to data warehouses and BI tools.
- [Build Web Data Visualization](https://hebbmind.com/skill/openai-openai-skills.md): [Skill] OpenAI's official set of 18 web data visualization skills: chart selection and critique, D3, Canvas, Three.js, maps, statistical uncertainty, live dashboards, Gantt charts, UML and scrollytelling. Ships with a Codex plugin; installed alone, the plugin-level references are missing.
- [Life Sciences NGS Analysis](https://hebbmind.com/plugin/ngs-analysis.md): [Plugin] OpenAI's official Codex plugin that guides sequencing analysis from BCL/FASTQ: QC, RNA-seq differential expression, single-cell, variant calling and metagenomics, favoring nf-core and other public pipelines with reproducible run logs. Checks for local tools first. Research use only.
- [Build Web Data Visualization](https://hebbmind.com/plugin/build-web-data-visualization.md): [Plugin] OpenAI's official Codex plugin with 18 skills to choose, design, build, test and export web charts, maps, dashboards, Gantt charts and UML, using D3, Vega-Lite and Three.js with attention to accessibility and responsiveness. Codex only.
- [OpenAI Developers](https://hebbmind.com/plugin/openai-developers.md): [Plugin] Build with OpenAI best practices inside Codex: call the OpenAI API, build and deploy agents with the Agents SDK, create ChatGPT apps and prepare submission materials, and create API keys directly. Maintained by OpenAI; Codex only.
- [Codex Security](https://hebbmind.com/plugin/codex-security.md): [Plugin] Security scans for a whole repo or for changes like PRs and commits, with threat modeling, vulnerability triage, fixes and re-verification; reports export to JSON, SARIF and more. OpenAI's official Codex plugin; requires Codex Security access.
- [sd](https://hebbmind.com/cli/sd.md): [CLI] A more intuitive find-and-replace tool than sed: uses JavaScript/Python-style regex syntax, supports literal string mode and in-place file edits, which suits agents doing bulk text rewrites.
- [Jupytext](https://hebbmind.com/cli/jupytext.md): [CLI] Converts and two-way syncs Jupyter notebooks with plain Python scripts or Markdown, so agents can edit research and teaching notebooks like ordinary text and diffs stay readable. Needs a local Python environment; install with pip.
- [arxiv-latex-cleaner](https://hebbmind.com/cli/arxiv-latex-cleaner.md): [CLI] Cleans a LaTeX project before arXiv submission: removes comments, auxiliary files and unused .tex files and images, and can compress images, so internal notes are not published with the source. From Google Research; installable with Homebrew on macOS.
- [Trafilatura](https://hebbmind.com/cli/trafilatura.md): [CLI] Python library and CLI for extracting main web content: fetches pages, crawls via sitemaps and RSS feeds, strips headers, footers and other noise, and outputs TXT, Markdown, JSON, XML and more with metadata. Also processes downloaded HTML offline.
- [zizmor](https://hebbmind.com/cli/zizmor.md): [CLI] Static security analysis for CI/CD config: finds template injection, credential leaks, excessive permissions and more in GitHub Actions workflows, also covers Dependabot and pre-commit configs, and auto-fixes some findings.
- [n8n Skills](https://hebbmind.com/skill/n8n-skills.md): [Skill] 14 n8n workflow skills: expression syntax, MCP tool usage, node configuration, validation and troubleshooting, Code nodes, AI Agent workflows and self-hosted n8n deployment. Meant to be used with the n8n-mcp server.
- [csvkit](https://hebbmind.com/cli/csvkit.md): [CLI] Veteran suite of CSV command-line tools: in2csv converts Excel and JSON to CSV, csvcut, csvgrep and csvsort filter and sort, csvstat computes statistics, and csvsql runs SQL directly against CSV files.
- [Lieflat Charts](https://hebbmind.com/skill/lieflat-charts.md): [Skill] Generates template-driven charts as single-file HTML: picks a chart from real Lupi, Basics, Glance, Maps and Interactive gallery implementations based on data shape, or fills one of 12 Chinese and English report templates. Defaults to Mono grayscale with semantic color presets. Written in Chinese.
- [Google Agents CLI Skills](https://hebbmind.com/skill/google-skills.md): [Skill] Google's official skills for building ADK agents: dev workflow, scaffolding, the ADK Python API, evaluation with LLM judges and adaptive rubrics, deployment to Agent Runtime, Cloud Run or GKE, publishing and observability. Works with agents-cli; local dev needs only an AI Studio key.
- [Quarto](https://hebbmind.com/cli/quarto-cli.md): [CLI] Posit's open-source scientific and technical publishing system built on Pandoc: embed Python, R or Julia code in Markdown or Jupyter notebooks, then quarto render produces HTML, PDF, Word, slides, websites and books.
- [Docker CLI](https://hebbmind.com/cli/docker-cli.md): [CLI] Docker's official CLI for building images, running and managing containers, viewing logs and pushing to registries, a foundational tool for agents setting up isolated environments. Needs a local or remote Docker Engine such as Docker Desktop.
- [pnpm](https://hebbmind.com/skill/pnpm.md): [Skill] Reference for pnpm 12: CLI, pnpm-workspace.yaml settings, monorepo workspaces, catalogs, overrides, patches, supply-chain settings such as build approval, task orchestration, CI setup and migration from npm, Yarn or older pnpm. Generated by Anthony Fu from the official docs.
- [Claude Scholar](https://hebbmind.com/skill/claude-scholar.md): [Skill] Semi-automated research workflow for computer science and AI researchers: ideation, Zotero literature management, experiment analysis and reports, paper writing and polishing, and rebuttals, with optional Obsidian knowledge base. 40+ skills; also installable as a Claude Code plugin.
- [Claude Scholar](https://hebbmind.com/plugin/claude-scholar.md): [Plugin] Semi-automated research assistant for CS and AI researchers that links ideation, Zotero literature management, experiment analysis and reporting, paper writing and reviewer responses, and keeps project knowledge in Obsidian. Branches for Codex and other agents exist.
- [Ghidra MCP Server](https://hebbmind.com/mcp/ghidra-mcp.md): [MCP] 250+ MCP tools for Ghidra: decompilation, cross-references, data-flow analysis, bulk renaming and commenting, P-code emulation and live debugging, with headless mode support. Requires Java 21 and Ghidra 12.1, and the plugin must be built and deployed first.
- [Draw.io MCP Server](https://hebbmind.com/mcp/drawio-mcp.md): [MCP] draw.io's official MCP: opens XML, CSV or Mermaid diagrams generated by the agent directly in the draw.io editor, good for flowcharts and architecture diagrams. A no-install remote version can also render diagrams inline in the chat.
- [Anthropic Sandbox Runtime (srt)](https://hebbmind.com/cli/sandbox-runtime.md): [CLI] Anthropic's official OS-level sandbox CLI: restricts file and network access for agents, MCP servers and any command without containers, using sandbox-exec on macOS and bubblewrap on Linux. Currently a research preview.
- [Finance Toolkit MCP](https://hebbmind.com/mcp/financetoolkit.md): [MCP] From the FinanceToolkit author: computes ratios, valuation, risk and macro indicators with 500+ transparent formulas, for company comparisons and first-pass due diligence. Hosted, no install; enter a Financial Modeling Prep key on first connect (free tier: US stocks, 5 years). Verify results.
- [GitHub Agentic Workflows](https://hebbmind.com/cli/gh-aw.md): [CLI] GitHub's official gh extension for writing Actions workflows in Markdown that AI agents execute, compiled into standard Actions. Choose engines like Copilot, Claude Code or Codex; runs in a read-only sandbox by default. Requires gh.
- [Design Control Loop](https://hebbmind.com/skill/design-control-loop.md): [Skill] Interviews you to design an agentic control loop for your codebase in control-theory terms: a set point, a sensor built from existing tooling, a controller that picks small low-risk changes, and a coding agent that opens PRs. Builds each part to run locally before wiring a scheduled CI workflow.
- [Build Iterated Agentic Loop](https://hebbmind.com/skill/build-iterated-agentic-loop.md): [Skill] Turns a repeatable agent task into a repo-local skill plus a GitHub Actions workflow that runs a coding agent (Claude Code, Codex, OpenCode or CodeLayer) on a schedule, with a prompt, memory file and one-open-PR bound. Reads the repo first, then walks you through cadence, scope and validation.
- [LM Studio CLI (lms)](https://hebbmind.com/cli/lms.md): [CLI] LM Studio's official CLI: list, load and unload local models, start and stop the local API server, and check status and logs; ls, ps and other commands support --json output for scripts and agents. Requires the LM Studio desktop app.
- [PySceneDetect](https://hebbmind.com/cli/pyscenedetect.md): [CLI] Detects shot changes in video and splits long footage into scenes, exporting cut lists and per-scene thumbnails, useful for shot analysis, organizing footage and finding edit points. Runs locally; needs Python 3.10+, plus FFmpeg or mkvmerge for splitting.
- [ExifTool](https://hebbmind.com/cli/exiftool.md): [CLI] Classic CLI for reading and writing metadata in hundreds of file types including images, video, audio and PDF, covering EXIF, GPS, IPTC, XMP and camera makers' proprietary tags, with batch editing, stripping and conversion. Requires Perl.
- [WP-CLI](https://hebbmind.com/cli/wp-cli.md): [CLI] WordPress's official CLI: install and update plugins and themes, manage posts and users, import and export content, run database search-replace and configure multisite from the terminal, without opening wp-admin. Requires PHP 7.2.24 or later.
- [Home Assistant MCP Server (ha-mcp)](https://hebbmind.com/mcp/ha-mcp.md): [MCP] Lets agents operate Home Assistant: control devices, query state and history, create and debug automations and edit dashboards, with 80+ tools. Community-maintained (unofficial); requires your own Home Assistant instance, and running via uvx needs a long-lived access token.
- [MCPorter](https://hebbmind.com/cli/mcporter.md): [CLI] CLI and TypeScript runtime for discovering and calling MCP servers from the terminal and scripts: list tool signatures and call tools directly, or generate a standalone CLI or typed client from a server. Auto-imports existing MCP configs from Claude Code, Codex and others.
- [YouPlot](https://hebbmind.com/cli/youplot.md): [CLI] Draws bar charts, histograms, line charts, scatter plots and box plots in the terminal from CSV/TSV on stdin, so you can glance at data distributions at the end of a shell pipeline. The command is uplot.
- [Claude Plugins Community](https://hebbmind.com/plugin/claude-plugins-community.md): [Plugin] Read-only mirror of the community plugin marketplace maintained by Anthropic, with 2,000+ community plugins that passed submission review and automated security scans, for Claude Code and Claude Cowork.
- [Auto-Empirical Research Skills (AERS)](https://hebbmind.com/skill/auto-empirical-research-skills.md): [Skill] Empirical social science skills from Stanford REAP and CoPaper.AI, bundling 77 in-house and third-party collections: topic selection, literature reviews, DID/RD/IV identification, regression tables in Python, Stata or R, robustness audits and paper writing. Stata flows need Stata installed.
- [Azure CLI](https://hebbmind.com/cli/azure-cli.md): [CLI] Microsoft's official Azure CLI (az) for managing VMs, storage, resource groups and other Azure resources, with JMESPath queries, table or JSON output and clear exit codes for scripting. Run az login first.
- [trash-cli](https://hebbmind.com/cli/trash-cli.md): [CLI] Moves files to the trash instead of deleting them, with commands to list, restore and empty trashed files, so anything an agent deletes by mistake can be recovered. Follows the FreeDesktop.org trash spec and shares the trash with GNOME and KDE.
- [AntV MCP Server Chart](https://hebbmind.com/mcp/mcp-server-chart.md): [MCP] Generates 26+ chart types with AntV, including line, bar, Sankey, word cloud, mind map and pivot table, returning image links. Officially maintained by Ant Group's AntV team; uses a public rendering service by default and can be self-hosted.
- [Gemini API Dev](https://hebbmind.com/skill/gemini-api-dev.md): [Skill] Teaches agents to code against the latest Gemini API and Python/TypeScript SDKs: multi-turn chat, function calling, structured output, and image and speech generation, while avoiding deprecated older models. Maintained by Google's Gemini team.
- [Gemini Skills](https://hebbmind.com/skill/gemini-skills.md): [Skill] Gemini API development skills: gemini-api-dev (core API and SDKs), gemini-live-api-dev (real-time bidirectional audio/video streaming) and gemini-omni-flash-api (Omni video generation and editing), filling in APIs released after model training cutoffs. Maintained by Google's Gemini team.
- [Excel MCP Server](https://hebbmind.com/mcp/excel-mcp-server.md): [MCP] Create, read and modify xlsx workbooks without Microsoft Excel installed: formulas, formatting and conditional formatting, charts, pivot tables and tables. Runs locally over stdio or as a remote HTTP service.
- [Nali](https://hebbmind.com/cli/nali.md): [CLI] Terminal tool for offline IP geolocation and CDN provider lookup, supporting QQwry, GeoIP2, ip2region and other databases. Pipe output from dig, nslookup and similar commands through it to annotate IPs automatically.
- [Container Use](https://hebbmind.com/cli/container-use.md): [CLI] From Dagger: gives each coding agent its own container and git branch so multiple agents work in parallel without interfering, with command logs and the ability to take over the terminal at any time. Connects via MCP; needs Docker and Git. Still experimental.
- [Container Use](https://hebbmind.com/mcp/container-use.md): [MCP] From Dagger: gives every coding agent an isolated container and Git branch so several agents can work in parallel, and you can view command logs, take over the terminal or discard results anytime. Needs Docker and Git locally; still experimental.
- [lychee](https://hebbmind.com/cli/lychee.md): [CLI] Fast async link checker written in Rust that scans websites and Markdown, HTML and other files for broken links and email addresses, with JSON output, config files and an official GitHub Action, often wired into docs CI.

Next page: https://hebbmind.com/tools.md?page=7&profession=devops%2Calgorithm%2Cdata%2Csecurity
