# Tools > Every listed resource, editors’ picks first. The filters below can be combined. - Search: append `?q=` to the URL. Separate several keywords with spaces; all of them must match. Matches name, repository, tags, professions, description and README. - Filter by type: append `?type=` to the URL. - Filter by profession: append `?profession=` to the URL. Separate several ids with commas; a resource matches when it suits any of them. Ids are listed at https://hebbmind.com/api/v1/professions - Filter by tag: append `?tag=` to the URL. Separate several tags with commas; a resource must carry all of them. Tags are listed at https://hebbmind.com/api/v1/tags Resources for Full-stack / Indie or ML / AI or Data analysis, Tagged `biomedical`: 13 items. > - Full-stack / Indie: General software work: coding-agent workflows, code review, debugging and Git collaboration. > - ML / AI: Model training, evaluation and LLM application development. > - Data analysis: Querying, statistical analysis, reporting and visualization. - [Scientific Agent Skills](https://hebbmind.com/skill/scientific-agent-skills.md): [Skill] 166 research skills maintained by K-Dense (formerly Claude Scientific Skills), spanning bioinformatics, cheminformatics, clinical research, materials and physics, including unified access to 78 public databases such as PubChem and UniProt. Works with Claude Code, Codex and Cursor. - [Database Lookup](https://hebbmind.com/skill/database-lookup.md): [Skill] Unified database lookup skill from K-Dense's scientific collection: reproducibly queries about 80 public database APIs such as PubChem, UniProt, ChEMBL, ClinicalTrials.gov and FRED, returning traceable results with endpoints, parameters and count checks. Some need API keys. - [Scanpy Single-Cell Analysis](https://hebbmind.com/skill/scanpy.md): [Skill] Teaches agents standard single-cell RNA-seq analysis with Scanpy: QC, normalization, PCA/UMAP, clustering, differential expression and plots, with ready-to-run pipeline scripts and guidance on converting Seurat and other R objects to h5ad. Needs Python 3.12+; by K-Dense. - [Bio Research](https://hebbmind.com/plugin/bio-research.md): [Plugin] For preclinical life sciences research: bundles MCP connectors for PubMed, bioRxiv, ChEMBL, Open Targets, ClinicalTrials and more, plus analysis skills for single-cell RNA QC, scvi-tools and nf-core pipelines. Official from Anthropic; some data sources need accounts. - [Feynman](https://hebbmind.com/cli/feynman.md): [CLI] Open-source research agent: one command runs literature reviews, deep research, paper reviews, paper-code consistency checks and replication plans, searching arXiv, PubMed and more with sources recorded. Good for grad students writing reviews. Run feynman setup to sign in to a model provider. - [Life Science Research](https://hebbmind.com/skill/openai-skills-5.md): [Skill] OpenAI's official life-science skills: 49 skills query public databases such as UniProt, ClinVar, gnomAD and AlphaFold through Python scripts, with a router skill that breaks down questions, normalizes entities and compiles sourced evidence. Written mainly for Codex. - [Life Science Research](https://hebbmind.com/plugin/life-science-research.md): [Plugin] OpenAI's official Codex plugin with about 50 skills that route questions to genetics, omics, pathway, protein structure, chemistry and clinical evidence sources, can split the work across parallel subagents, and synthesize sourced conclusions. - [Life Sciences NGS Analysis](https://hebbmind.com/plugin/ngs-analysis.md): [Plugin] OpenAI's official Codex plugin that guides sequencing analysis from BCL/FASTQ: QC, RNA-seq differential expression, single-cell, variant calling and metagenomics, favoring nf-core and other public pipelines with reproducible run logs. Checks for local tools first. Research use only. - [Science Skills](https://hebbmind.com/skill/science-skills.md): [Skill] About 40 research skills from Google DeepMind: search arXiv, PubMed and OpenAlex, query UniProt, PDB, ClinVar, ChEMBL and more, run AlphaGenome variant analysis and render structures in PyMOL. Requires uv; AlphaGenome needs an API key, and keys raise limits for OpenAlex, ClinVar and others. - [ToolUniverse](https://hebbmind.com/mcp/tooluniverse.md): [MCP] From Harvard Medical School's Zitnik Lab: one MCP connecting 1,000+ scientific tools and databases for drugs and targets, genes and proteins, clinical trials, FDA data and PubMed, for biomedical and drug research. Runs with uv; some sources need API keys; medical conclusions need expert review. - [BioMCP](https://hebbmind.com/mcp/biomcp.md): [MCP] Searches about 30 biomedical sources, including PubMed, ClinicalTrials.gov, ClinVar and OncoKB, with one command syntax, covering literature, clinical trials, genetic variants, drugs and pathways. Ships as both a CLI and an MCP server. - [Life Sciences](https://hebbmind.com/plugin/life-sciences.md): [Plugin] Anthropic's official life sciences plugin marketplace: install MCP plugins such as PubMed, BioRender, Synapse, ChEMBL and 10x Genomics, plus research skills for single-cell RNA QC, Nextflow pipelines and scvi-tools. Some data sources need an account or subscription. - [Agent Skills for Healthcare & Life Sciences](https://hebbmind.com/skill/hcls-agent-skills.md): [Skill] 42 official AWS skills for healthcare and life sciences: medical coding and terminology mapping, FHIR/HL7 parsing, claims and prior authorization rules, medical imaging, pharmacoepidemiology and genomics, per US standards. Some need local software. Not for clinical decisions; expert review required.