Tools

Processes CSV, TSV, JSON and other structured data like awk, sed, cut, join and sort, but by field name, for cleaning, aggregation, format conversion and pretty-printing. The command is mlr; written in Go with no runtime dependencies.

OpenAI's official Codex plugin that guides sequencing analysis from BCL/FASTQ: QC, RNA-seq differential expression, single-cell, variant calling and metagenomics, favoring nf-core and other public pipelines with reproducible run logs. Checks for local tools first. Research use only.

Fast Rust toolkit for tabular data with nearly 80 subcommands for querying, stats, cleaning, validation, joins and format conversion on CSV and Excel. Also offers an MCP server and a Claude Cowork plugin.

dbt Labs' official plugin marketplace with dbt and dbt-migration plugins: write models and unit tests, build semantic-layer metrics, govern with dbt Mesh, debug failed jobs, and handle version upgrades and cross-platform migrations. Most skills need an existing dbt project.

Lets agents read dbt project models, lineage and Semantic Layer metrics, run build, run and test commands, and call the dbt platform Discovery and Admin APIs. Maintained by dbt Labs; Semantic Layer and platform tools need a dbt platform account.