Tools

Publishes SQLite databases as browsable, queryable web pages and JSON APIs, with SQL queries, metadata and plugins, and deploys to Cloud Run and other platforms with datasette publish. Great for data exploration and data journalism. Needs Python 3.10+.

Hugging Face's official skills: manage Hub models and datasets with the hf CLI, fine-tune language and vision models, run model evaluations, and build Gradio apps deployed to Spaces. Needs an HF account; cloud training on HF Jobs requires a paid plan.

PDF translation CLI for research papers that preserves formulas and layout as much as possible, producing bilingual side-by-side or translation-only PDFs. Needs an OpenAI-compatible API (local Ollama works too); currently focused on English to Chinese.

High-accuracy retrieval-augmented Q&A over paper PDFs, text and Office documents, filling in citation metadata, checking retractions and attaching traceable sources to answers. Provides the pqa CLI and a Python library. Needs an LLM API key by default; local models can be configured.

Terminal tool for exploring and wrangling tabular data: opens dozens of formats including CSV, JSON, Excel and SQLite for filtering, sorting, pivots and frequency counts. --batch mode replays actions headlessly or converts file formats.

Publication-quality matplotlib plotting skill from a Yale PhD student: bar charts, trends, heatmaps and multi-panel figures with consistent fonts, colors and export settings, plus real plotting scripts from papers published in venues like Nature Machine Intelligence. Needs Python.

Converts the output of 100+ commands such as dig, ps, ls and ifconfig, plus common file formats, into JSON so agents can parse it reliably with jq or scripts. Also usable as a Python library.

Open-source LLM evaluation platform: one opencompass command picks the model and datasets and runs the evaluation across hundreds of benchmarks. Works with local Hugging Face models and API models, with vLLM and LMDeploy for faster inference.

OpenAI's official life-science skills: 49 skills query public databases such as UniProt, ClinVar, gnomAD and AlphaFold through Python scripts, with a router skill that breaks down questions, normalizes entities and compiles sourced evidence. Written mainly for Codex.

Creates, edits and validates reproducible Python and SQL Jupyter notebooks: organizes cells as reports or tutorials, checks conclusions against actual output and reruns top to bottom before handoff. Maintained by OpenAI in the Data Analytics plugin of openai/plugins.

Python library and CLI for extracting main web content: fetches pages, crawls via sitemaps and RSS feeds, strips headers, footers and other noise, and outputs TXT, Markdown, JSON, XML and more with metadata. Also processes downloaded HTML offline.

Open-source offline machine translation built on OpenNMT, usable as a CLI, Python library or GUI. Download language packages as needed; when no direct model exists it pivots through an intermediate language. Suits text you would rather not upload to the cloud.

Veteran suite of CSV command-line tools: in2csv converts Excel and JSON to CSV, csvcut, csvgrep and csvsort filter and sort, csvstat computes statistics, and csvsql runs SQL directly against CSV files.

Lets agents operate Home Assistant: control devices, query state and history, create and debug automations and edit dashboards, with 80+ tools. Community-maintained (unofficial); requires your own Home Assistant instance, and running via uvx needs a long-lived access token.

Moves files to the trash instead of deleting them, with commands to list, restore and empty trashed files, so anything an agent deletes by mistake can be recovered. Follows the FreeDesktop.org trash spec and shares the trash with GNOME and KDE.

English prose linter that turns usage guides such as Garner's and advice from great writers into rules, flagging clichés, redundancy, bad comparisons and usage errors line by line, with JSON output for agents. Runs locally with Python; English only.

Uses Obsidian's community Local REST API plugin so agents can list, read, search, append to and delete notes, and insert content at a heading, block reference or frontmatter field. Install that plugin and configure its API key first.

Hugging Face's official hf CLI: search, download and upload models and datasets, manage repos and storage buckets, and run jobs on Hugging Face's cloud. Output adapts automatically for agents, and hf skills add installs companion skills. Uploads and similar actions need a login.

Recognizes images or whole PDFs (including scans) with math formulas and tables into Markdown and LaTeX, strong on English and Chinese and supporting 80+ languages, handy for digitizing exams, lecture notes and study notes. An open-source Mathpix alternative that runs locally with Python.

Unified search across 20+ academic sources including arXiv, PubMed, bioRxiv, Semantic Scholar and OpenAlex, returning deduplicated, normalized results and downloading full text via open-access channels first. Most sources need no API key.

A three-stage workflow for math modeling contests like MCM/ICM and CUMCM: analysis, solving and plotting in Python or MATLAB, and a Word (optionally LaTeX) paper, with stage-check subagents and OpenAlex plus AnySearch literature search. Generated papers are for reference only.

Command-line reference and bibliography manager: add papers by DOI with metadata fetched automatically, search by author, title or tag, and import or export BibTeX. Each entry is a readable YAML file that agents can read and write easily; a web UI is included. Needs Python.

Web search through DuckDuckGo plus fetching and parsing page content, with built-in rate limiting and LLM-friendly result formatting. No API key needed; runs with a single uvx command.

Jupyter's official tool for notebook assignments: once teachers mark up questions and solutions, the CLI generates student versions, collects submissions, auto-grades and produces feedback. Suits programming and data courses. Needs Python and Jupyter; assignments must use nbgrader's markup.