Tools

From Microsoft: converts PDF, Word, Excel, PowerPoint, HTML and other files or URLs to Markdown so agents can read and search them. A single convert_to_markdown tool over STDIO or local HTTP.

Converts PDF, Word, Excel, PowerPoint, HTML, images, audio and more into Markdown that keeps headings, lists and tables, ready for LLMs to read and analyze. Maintained by Microsoft; requires Python 3.10+.

166 research skills maintained by K-Dense (formerly Claude Scientific Skills), spanning bioinformatics, cheminformatics, clinical research, materials and physics, including unified access to 78 public databases such as PubChem and UniProt. Works with Claude Code, Codex and Cursor.

Local MCP server built into Browser Use: lets agents navigate, click, type and extract page content, or hand multi-step tasks to the built-in browser agent. Bring your own OpenAI or Anthropic API key.

Astral's extremely fast Python package and project manager written in Rust, replacing pip, pipx, poetry, pyenv and more. Supports lockfiles and multiple Python versions, and uvx runs Python tools without installing them.

MCP server built into the adaptive Python scraping framework Scrapling: supports plain HTTP requests, browser rendering and stealth fetching, and uses CSS selectors to pass only the target content to the AI, saving tokens and filtering out prompt injection.

Adaptive web scraping framework: scrapling extract turns a page into Markdown, text or HTML in one command, with CSS selectors and browser rendering for dynamic pages, plus an MCP server (needs the ai extra). Needs Python 3.10+ and a browser install on first use.

Open-source, LLM-friendly web crawler that turns pages into clean Markdown for RAG and agents. Ships the crwl CLI and supports deep crawling and question-driven data extraction (extraction needs an LLM key). Free to self-host.

Command-line edition of the open-source OpenBB investment research platform: query stock prices, financial statements, macroeconomic and other financial data from the terminal, and automate data pulls with Routine scripts. Officially maintained; some sources need API keys.

Parses PDF, DOCX, PPTX, XLSX, HTML, images and audio, recovering layout, reading order, tables and formulas, and exports Markdown, HTML or lossless JSON. Started by IBM Research, now hosted by the LF AI & Data Foundation; runs fully locally.

Guides agents to the right statistical method for research data: t-tests, ANOVA, chi-square, regression and Bayesian analysis, checking assumptions, computing effect sizes and power, and reporting results in APA format. Python-based (pingouin, statsmodels); by K-Dense.

Teaches agents standard single-cell RNA-seq analysis with Scanpy: QC, normalization, PCA/UMAP, clustering, differential expression and plots, with ready-to-run pipeline scripts and guidance on converting Seurat and other R objects to h5ad. Needs Python 3.12+; by K-Dense.

Connects Claude Code to the Pyright language server for static type checking and code intelligence in Python. Install pyright first with npm, pip or pipx. Official Anthropic plugin.

Converts PDFs, images, PPTX, DOCX, XLSX, EPUB and more into Markdown, JSON or HTML, preserving tables, formulas and layout, with optional LLM help for higher accuracy. Needs Python 3.10+ and PyTorch; large-scale commercial use of the model weights needs a paid license.

Unofficial Python library and CLI for driving Google NotebookLM (now Gemini Notebook): bulk-import sources, ask cited questions, and generate and download podcasts, videos, slides, quizzes and flashcards. Ships an agent skill. Relies on undocumented APIs and needs a Google sign-in.

Version datasets and models the way Git versions code: data lives in remote storage like S3 or GCS while versions are tracked in your Git repo. Also offers reproducible pipelines and local experiment tracking, rerunning only the steps affected by a change.

Simon Willison's LLM CLI and Python library: call OpenAI, Claude, Gemini and local models from the terminal, with conversations logged to SQLite automatically, plus embeddings, structured extraction, tool calling and a plugin system.

Converts text to speech with Microsoft Edge's online TTS service and can generate subtitle files at the same time. No API key needed, with voices for many languages. Not an official Microsoft project and depends on that online service staying available.

MySQL terminal client with smart autocompletion and syntax highlighting, also compatible with MariaDB and TiDB. Supports --execute and batch mode with CSV or table output, so agents can run SQL directly.

Publishes SQLite databases as browsable, queryable web pages and JSON APIs, with SQL queries, metadata and plugins, and deploys to Cloud Run and other platforms with datasette publish. Great for data exploration and data journalism. Needs Python 3.10+.

Scans files and directories for personal data such as names, emails and credit card numbers using Presidio Analyzer, with configurable entity types, confidence thresholds and ignore rules. Needs Python 3.10+ and a spaCy language model.

Reads the exact position of every character, line and table cell in digital PDFs: the CLI exports layout-preserving text or CSV/JSON details, and the Python API extracts tables and form fields, ideal for invoices, statements and reports. Runs locally with Python; scans need OCR first.

Linter and formatter for 20+ SQL dialects that auto-fixes most issues and handles Jinja templating and dbt projects (dbt needs a plugin), suited to warehouse code review and CI.

Terminal tool for exploring and wrangling tabular data: opens dozens of formats including CSV, JSON, Excel and SQLite for filtering, sorting, pivots and frequency counts. --batch mode replays actions headlessly or converts file formats.